肠贾第虫烯醇化酶与人纤溶酶原相互作用的研究进展

IF 3.743 Q2 Biochemistry, Genetics and Molecular Biology Molecular BioSystems Pub Date : 2017-07-17 DOI:10.1039/C7MB00252A
R. Aguayo-Ortiz, P. Meza-Cervantez, R. Castillo, A. Hernández-Campos, L. Dominguez and L. Yépez-Mulia
{"title":"肠贾第虫烯醇化酶与人纤溶酶原相互作用的研究进展","authors":"R. Aguayo-Ortiz, P. Meza-Cervantez, R. Castillo, A. Hernández-Campos, L. Dominguez and L. Yépez-Mulia","doi":"10.1039/C7MB00252A","DOIUrl":null,"url":null,"abstract":"<p >\r\n <em>Giardia intestinalis</em> is an intestinal parasite that causes diarrhea in humans and animals worldwide. The enolase of <em>G. intestinalis</em> (GiENO) participates in its glycolysis pathway and is abundantly expressed in the parasite cytosol; however, its localization on the surface of trophozoites and cysts has been demonstrated. Enolases from bacteria and parasites can have different functions and are considered moonlighting proteins, for example, as a cell surface plasminogen receptor. In relation to GiENO, no studies have been performed about its possible participation as a plasminogen receptor. In this work, we employed molecular docking and multiscale molecular dynamics (MD) simulations to explore the possible interactions of human plasminogen (HsPLG) with the <em>open</em> and <em>closed</em> GiENO conformations. Our proposed GiENO plasminogen binding site (PLGBs) was identified at Lys266 based on the sequence comparison with bacterial enolase known to act as a plasminogen receptor. Our docking results performed with multiple MD snapshots of the <em>closed</em> GiENO conformation showed that Lys266 preferentially binds to the K5 domain of HsPLG. On the other hand, <em>open</em> GiENO conformations from all-atom and coarse-grained simulations indicated a high preference of the HsPLG K4 domain for lysine residues 186 and 188. Furthermore, we identified a potential N-glycosylation site of GiENO which suggests a possible explanation for the parasite cell surface localization or host mucin oligosaccharide adhesion mechanism. Our study constitutes the first multiscale computational study to explore the plasminogen receptor function of GiENO for its further consideration as a potential therapeutic target for giardiasis treatment.</p>","PeriodicalId":90,"journal":{"name":"Molecular BioSystems","volume":" 10","pages":" 2015-2023"},"PeriodicalIF":3.7430,"publicationDate":"2017-07-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1039/C7MB00252A","citationCount":"9","resultStr":"{\"title\":\"Insights into the Giardia intestinalis enolase and human plasminogen interaction†\",\"authors\":\"R. Aguayo-Ortiz, P. Meza-Cervantez, R. Castillo, A. Hernández-Campos, L. Dominguez and L. Yépez-Mulia\",\"doi\":\"10.1039/C7MB00252A\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p >\\r\\n <em>Giardia intestinalis</em> is an intestinal parasite that causes diarrhea in humans and animals worldwide. The enolase of <em>G. intestinalis</em> (GiENO) participates in its glycolysis pathway and is abundantly expressed in the parasite cytosol; however, its localization on the surface of trophozoites and cysts has been demonstrated. Enolases from bacteria and parasites can have different functions and are considered moonlighting proteins, for example, as a cell surface plasminogen receptor. In relation to GiENO, no studies have been performed about its possible participation as a plasminogen receptor. In this work, we employed molecular docking and multiscale molecular dynamics (MD) simulations to explore the possible interactions of human plasminogen (HsPLG) with the <em>open</em> and <em>closed</em> GiENO conformations. Our proposed GiENO plasminogen binding site (PLGBs) was identified at Lys266 based on the sequence comparison with bacterial enolase known to act as a plasminogen receptor. Our docking results performed with multiple MD snapshots of the <em>closed</em> GiENO conformation showed that Lys266 preferentially binds to the K5 domain of HsPLG. On the other hand, <em>open</em> GiENO conformations from all-atom and coarse-grained simulations indicated a high preference of the HsPLG K4 domain for lysine residues 186 and 188. Furthermore, we identified a potential N-glycosylation site of GiENO which suggests a possible explanation for the parasite cell surface localization or host mucin oligosaccharide adhesion mechanism. Our study constitutes the first multiscale computational study to explore the plasminogen receptor function of GiENO for its further consideration as a potential therapeutic target for giardiasis treatment.</p>\",\"PeriodicalId\":90,\"journal\":{\"name\":\"Molecular BioSystems\",\"volume\":\" 10\",\"pages\":\" 2015-2023\"},\"PeriodicalIF\":3.7430,\"publicationDate\":\"2017-07-17\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://sci-hub-pdf.com/10.1039/C7MB00252A\",\"citationCount\":\"9\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Molecular BioSystems\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://pubs.rsc.org/en/content/articlelanding/2017/mb/c7mb00252a\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"Biochemistry, Genetics and Molecular Biology\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Molecular BioSystems","FirstCategoryId":"1085","ListUrlMain":"https://pubs.rsc.org/en/content/articlelanding/2017/mb/c7mb00252a","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"Biochemistry, Genetics and Molecular Biology","Score":null,"Total":0}
引用次数: 9

摘要

贾第鞭毛虫是一种引起全世界人类和动物腹泻的肠道寄生虫。肠烯醇酶(GiENO)参与其糖酵解途径,在寄生虫胞质中大量表达;然而,它在滋养体和包囊表面的定位已被证实。来自细菌和寄生虫的烯醇化酶可以具有不同的功能,被认为是兼职蛋白质,例如,作为细胞表面纤溶酶原受体。关于GiENO,没有关于其可能作为纤溶酶原受体参与的研究。在这项工作中,我们采用分子对接和多尺度分子动力学(MD)模拟来探索人类纤溶酶原(HsPLG)与开放和封闭GiENO构象之间可能的相互作用。通过与已知作为纤溶酶原受体的细菌烯醇化酶的序列比较,我们在Lys266中确定了GiENO纤溶酶原结合位点(plgb)。我们对封闭GiENO构象的多个MD快照进行的对接结果显示,Lys266优先结合HsPLG的K5结构域。另一方面,来自全原子和粗粒度模拟的开放GiENO构象表明HsPLG K4结构域高度偏爱赖氨酸残基186和188。此外,我们发现了一个潜在的GiENO n -糖基化位点,这可能解释了寄生虫细胞表面定位或宿主粘蛋白寡糖粘附机制。我们的研究构成了第一个探索GiENO纤溶酶原受体功能的多尺度计算研究,以进一步考虑其作为贾第虫病治疗的潜在治疗靶点。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

摘要图片

查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
Insights into the Giardia intestinalis enolase and human plasminogen interaction†

Giardia intestinalis is an intestinal parasite that causes diarrhea in humans and animals worldwide. The enolase of G. intestinalis (GiENO) participates in its glycolysis pathway and is abundantly expressed in the parasite cytosol; however, its localization on the surface of trophozoites and cysts has been demonstrated. Enolases from bacteria and parasites can have different functions and are considered moonlighting proteins, for example, as a cell surface plasminogen receptor. In relation to GiENO, no studies have been performed about its possible participation as a plasminogen receptor. In this work, we employed molecular docking and multiscale molecular dynamics (MD) simulations to explore the possible interactions of human plasminogen (HsPLG) with the open and closed GiENO conformations. Our proposed GiENO plasminogen binding site (PLGBs) was identified at Lys266 based on the sequence comparison with bacterial enolase known to act as a plasminogen receptor. Our docking results performed with multiple MD snapshots of the closed GiENO conformation showed that Lys266 preferentially binds to the K5 domain of HsPLG. On the other hand, open GiENO conformations from all-atom and coarse-grained simulations indicated a high preference of the HsPLG K4 domain for lysine residues 186 and 188. Furthermore, we identified a potential N-glycosylation site of GiENO which suggests a possible explanation for the parasite cell surface localization or host mucin oligosaccharide adhesion mechanism. Our study constitutes the first multiscale computational study to explore the plasminogen receptor function of GiENO for its further consideration as a potential therapeutic target for giardiasis treatment.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Molecular BioSystems
Molecular BioSystems 生物-生化与分子生物学
CiteScore
2.94
自引率
0.00%
发文量
0
审稿时长
2.6 months
期刊介绍: Molecular Omics publishes molecular level experimental and bioinformatics research in the -omics sciences, including genomics, proteomics, transcriptomics and metabolomics. We will also welcome multidisciplinary papers presenting studies combining different types of omics, or the interface of omics and other fields such as systems biology or chemical biology.
期刊最新文献
Effects of Oxaliplatin on Facial Sensitivity to Cool Temperatures and TRPM8 Expressing Trigeminal Ganglion Neurons in Mice. Correction: Dynamic properties of dipeptidyl peptidase III from Bacteroides thetaiotaomicron and the structural basis for its substrate specificity – a computational study Pharmacology of predatory and defensive venom peptides in cone snails Staphylococcus aureus extracellular vesicles (EVs): surface-binding antagonists of biofilm formation† Mechanism of the formation of the RecA–ssDNA nucleoprotein filament structure: a coarse-grained approach
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1