用线粒体细胞色素氧化酶亚基I (COI)基因序列方法推断印度安达曼和尼科巴群岛中Aplousobranchiata和Phlebobranchiata Ascidians(门:脊索动物)的DNA条形码:首次报道。

Rajaram Murugan, Gnanakkan Ananthan, Anandakumar Arunkumar
{"title":"用线粒体细胞色素氧化酶亚基I (COI)基因序列方法推断印度安达曼和尼科巴群岛中Aplousobranchiata和Phlebobranchiata Ascidians(门:脊索动物)的DNA条形码:首次报道。","authors":"Rajaram Murugan,&nbsp;Gnanakkan Ananthan,&nbsp;Anandakumar Arunkumar","doi":"10.1080/24701394.2020.1798417","DOIUrl":null,"url":null,"abstract":"<p><p>Ascidians (Phylum: Chordata) are sessile and filter-feeding marine animal, species identification of ascidians is possible by observing various morphological and anatomical features in various stages of life span. However, this method is labor intensive, time-consuming and very difficult for non-specialists particularly when dealing with field collections. Suborder Aplousobranchiata and Phlebobranchiata is the largest group of tunicates within, morphological and molecular data suggest that Didemnidae and Ascidiidae are monophyletic, but the monophyly of each genus and their phylogenetic relationships are still poorly understood. Therefore, this study was aimed to develop DNA barcodes of ascidians belonging to the orders of Aplousobranchiata and Phlebobranchiata species namely <i>Diplosoma listerianum</i>, <i>Lissoclinum fragile</i>, <i>Didemnum psammatode</i>, <i>Phallusia fumigata</i> and <i>Phallusia ingeria</i> collected from Andaman and Nicobar Islands were sequenced and submitted in Gen Bank. Colony structure, Scanning Electron Microscope (SEM) for spicules of colonial ascidians, larval type and zooids formation were found to be the most useful morphological characters for discriminating the species. Our BLAST results proved <i>D. Listerianum</i> KP842724 (98%) <i>L. fragile</i> KP842726 (100%) <i>D. psammatode</i> KP779902 (99%), <i>P. fumigata</i> KP779904 (99%) and <i>P. ingeria</i> KP842727 (100%) similarity and this is the first report of mitochondrial COI gene of these ascidians from Andaman and Nicobar Islands. We explored the usefulness of CO1 gene sequences for molecular level identification and mtDNA data in assessing a phylogenetic relationship of ascidian species.</p>","PeriodicalId":74204,"journal":{"name":"Mitochondrial DNA. Part A, DNA mapping, sequencing, and analysis","volume":null,"pages":null},"PeriodicalIF":0.0000,"publicationDate":"2020-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1080/24701394.2020.1798417","citationCount":"1","resultStr":"{\"title\":\"DNA bar coding of Aplousobranchiata and Phlebobranchiata Ascidians (Phylum:Chordata) inferred from mitochondrial cytochrome oxidase subunit I (COI) gene sequence approach in Andaman and Nicobar Islands, India: a first report.\",\"authors\":\"Rajaram Murugan,&nbsp;Gnanakkan Ananthan,&nbsp;Anandakumar Arunkumar\",\"doi\":\"10.1080/24701394.2020.1798417\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>Ascidians (Phylum: Chordata) are sessile and filter-feeding marine animal, species identification of ascidians is possible by observing various morphological and anatomical features in various stages of life span. However, this method is labor intensive, time-consuming and very difficult for non-specialists particularly when dealing with field collections. Suborder Aplousobranchiata and Phlebobranchiata is the largest group of tunicates within, morphological and molecular data suggest that Didemnidae and Ascidiidae are monophyletic, but the monophyly of each genus and their phylogenetic relationships are still poorly understood. Therefore, this study was aimed to develop DNA barcodes of ascidians belonging to the orders of Aplousobranchiata and Phlebobranchiata species namely <i>Diplosoma listerianum</i>, <i>Lissoclinum fragile</i>, <i>Didemnum psammatode</i>, <i>Phallusia fumigata</i> and <i>Phallusia ingeria</i> collected from Andaman and Nicobar Islands were sequenced and submitted in Gen Bank. Colony structure, Scanning Electron Microscope (SEM) for spicules of colonial ascidians, larval type and zooids formation were found to be the most useful morphological characters for discriminating the species. Our BLAST results proved <i>D. Listerianum</i> KP842724 (98%) <i>L. fragile</i> KP842726 (100%) <i>D. psammatode</i> KP779902 (99%), <i>P. fumigata</i> KP779904 (99%) and <i>P. ingeria</i> KP842727 (100%) similarity and this is the first report of mitochondrial COI gene of these ascidians from Andaman and Nicobar Islands. We explored the usefulness of CO1 gene sequences for molecular level identification and mtDNA data in assessing a phylogenetic relationship of ascidian species.</p>\",\"PeriodicalId\":74204,\"journal\":{\"name\":\"Mitochondrial DNA. Part A, DNA mapping, sequencing, and analysis\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2020-10-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://sci-hub-pdf.com/10.1080/24701394.2020.1798417\",\"citationCount\":\"1\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Mitochondrial DNA. Part A, DNA mapping, sequencing, and analysis\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.1080/24701394.2020.1798417\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2020/7/30 0:00:00\",\"PubModel\":\"Epub\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Mitochondrial DNA. Part A, DNA mapping, sequencing, and analysis","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1080/24701394.2020.1798417","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2020/7/30 0:00:00","PubModel":"Epub","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 1

摘要

海鞘(脊索动物门)是一种无肢的滤食性海洋动物,通过观察其不同生命阶段的形态和解剖特征,可以对海鞘进行物种鉴定。然而,这种方法是劳动密集型的,耗时的,对于非专业人员来说非常困难,特别是在处理现场收集时。Aplousobranchiata和Phlebobranchiata是被囊动物中最大的类群,形态学和分子数据表明Didemnidae和Ascidiidae是单系的,但每个属的单系性和它们的系统发育关系仍然知之甚少。因此,本研究旨在建立Aplousobranchiata和Phlebobranchiata两目海鞘的DNA条形码,即Diplosoma listerianum、Lissoclinum fragile、Didemnum psammatode、Phallusia fumigata和Phallusia ingeria,并对采集自安达曼和尼科巴群岛的海鞘进行测序并提交到genbank。群落结构、扫描电子显微镜(SEM)观察海鞘的针状体、幼虫类型和动物形成是鉴别海鞘的重要形态学特征。BLAST结果证实了D. listerium KP842724(98%)、L. fragile KP842726(100%)、D. psammatode KP779902(99%)、P. fumigata KP779904(99%)和P. ingeria KP842727(100%)的相似性,这是安达曼和尼科巴群岛海鞘线粒体COI基因的首次报道。我们探索了CO1基因序列在分子水平上的鉴定和mtDNA数据在评估海鞘物种系统发育关系中的作用。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
DNA bar coding of Aplousobranchiata and Phlebobranchiata Ascidians (Phylum:Chordata) inferred from mitochondrial cytochrome oxidase subunit I (COI) gene sequence approach in Andaman and Nicobar Islands, India: a first report.

Ascidians (Phylum: Chordata) are sessile and filter-feeding marine animal, species identification of ascidians is possible by observing various morphological and anatomical features in various stages of life span. However, this method is labor intensive, time-consuming and very difficult for non-specialists particularly when dealing with field collections. Suborder Aplousobranchiata and Phlebobranchiata is the largest group of tunicates within, morphological and molecular data suggest that Didemnidae and Ascidiidae are monophyletic, but the monophyly of each genus and their phylogenetic relationships are still poorly understood. Therefore, this study was aimed to develop DNA barcodes of ascidians belonging to the orders of Aplousobranchiata and Phlebobranchiata species namely Diplosoma listerianum, Lissoclinum fragile, Didemnum psammatode, Phallusia fumigata and Phallusia ingeria collected from Andaman and Nicobar Islands were sequenced and submitted in Gen Bank. Colony structure, Scanning Electron Microscope (SEM) for spicules of colonial ascidians, larval type and zooids formation were found to be the most useful morphological characters for discriminating the species. Our BLAST results proved D. Listerianum KP842724 (98%) L. fragile KP842726 (100%) D. psammatode KP779902 (99%), P. fumigata KP779904 (99%) and P. ingeria KP842727 (100%) similarity and this is the first report of mitochondrial COI gene of these ascidians from Andaman and Nicobar Islands. We explored the usefulness of CO1 gene sequences for molecular level identification and mtDNA data in assessing a phylogenetic relationship of ascidian species.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
自引率
0.00%
发文量
0
期刊最新文献
Inferring the origin of new D-loop haplotypes of loggerhead sea turtles (Testudinata: Cheloniidae) from the Southwest Atlantic lineage. Association between mitochondrial DNA genotype and sperm motility in humans. Population genetic structure and demographic history of short mackerel, Rastrelliger brachysoma, in the Gulf of Thailand. DNA barcoding reveals cryptic species in the sea slater Ligia italica (Crustacea, Isopoda) from Tunisia. Mitochondrial genome rearrangements and phylogenomics of the Hymenoptera (Insecta) using an expanded taxon sample.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1