Siroheme-[4Fe-4S]偶联中心。

Isabel Askenasy, M Elizabeth Stroupe
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引用次数: 3

摘要

在自然界中,硫以多种氧化态存在,双电子还原形式是生物分子中最常见的,如含硫氨基酸半胱氨酸和蛋氨酸,一些辅因子和多糖。硫通过两种途径还原:异化,其中亚硫酸盐(SO2-3)被用作终端电子受体;和同化,亚硫酸盐被还原成硫化物(S2-)并入生物量。这些途径是独立的,但共享亚硫酸盐还原酶的功能,其中一个酶通过6个电子还原亚硫酸盐生成硫化物。除了少数例外,来自这两种途径的亚硫酸盐还原酶都是铁金属酶,具有从单体到四聚体的不同结构。亚硫酸盐还原酶的标志是其催化中心由一种称为siroheme的含铁卟啉类物质组成,该物质通过共享的半胱氨酸配体与[4Fe-4S]簇共价偶联。衬底通过推拉机制演变,其中电子转移与三个脱水步骤相耦合。siro血红素是一种比原卟啉ix衍生的血红素更容易被氧化的同菌氯。它是由uroporphyrinogen III通过三步(甲基化,脱氢和铁螯合)合成的,这些步骤是由与钴胺素合成相关的酶同源的酶完成的。未来的研究将需要解决如何将siroheme-[4Fe-4S]簇组装成载亚硫酸盐和亚硝酸盐还原酶。本章将讨论环境微生物如何利用亚硫酸盐还原酶在一系列生态系统中生存;异化亚硫酸盐还原酶和同化亚硫酸盐还原酶的原子分辨结构如何揭示它们的古代同源性siroheme-[4Fe-4S]簇活性位点如何催化亚硫酸盐六电子还原为硫化物;以及西罗血红素是如何在不同微生物中合成的。
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The Siroheme-[4Fe-4S] Coupled Center.

In nature, sulfur exists in a range of oxidation states and the two-electron reduced form is the most commonly found in biomolecules like the sulfur-containing amino acids cysteine and methionine, some cofactors, and polysaccharides. Sulfur is reduced through two pathways: dissimilation, where sulfite (SO2-3) is used as terminal electron acceptor; and assimilation, where sulfite is reduced to sulfide (S2-) for incorporation into biomass. The pathways are independent, but share the sulfite reductase function, in which a single enzyme reduces sulfite by six electrons to make sulfide. With few exceptions, sulfite reductases from either pathway are iron metalloenzymes with structurally diverse configurations that range from monomers to tetramers. The hallmark of sulfite reductase is its catalytic center made of an iron-containing porphyrinoid called siroheme that is covalently coupled to a [4Fe-4S] cluster through a shared cysteine ligand. The substrate evolves through a push-pull mechanism, where electron transfer is coupled to three dehydration steps. Siroheme is an isobacteriochlorin that is more readily oxidized than protoporphyin IX-derived hemes. It is synthesized from uroporphyrinogen III in three steps (methylation, a dehydrogenation, and ferrochelation) that are performed by enzymes with homology to those involved in cobalamin synthesis. Future research will need to address how the siroheme-[4Fe-4S] clusters are assembled into apo-sulfite and nitrite reductases. The chapter will discuss how environmental microbes use sulfite reductase to survive in a range of ecosystems; how atomic-resolution structures of dissimilatory and assimilatory sulfite reductases reveal their ancient homology; how the siroheme-[4Fe-4S] cluster active site catalyzes the six-electron reduction of sulfite to sulfide; and how siroheme is synthesized across diverse microrganisms.

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Introduction: Transition Metals and Sulfur. Sulfur, the Versatile Non-metal. The Type 1 Blue Copper Site: From Electron Transfer to Biological Function. Purple Mixed-Valent Copper A. The Tetranuclear Copper-Sulfide Center of Nitrous Oxide Reductase.
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