小分子斯坦唑对人神经干细胞作用的定量蛋白质组学分析。

IF 2.1 3区 生物学 Q3 BIOCHEMICAL RESEARCH METHODS Proteome Science Pub Date : 2020-12-09 DOI:10.1186/s12953-020-00168-2
Huajun Li, Yubo Zhang, Jing Zhang, Chaoran Zhao, Yizi Zhu, Mei Han
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引用次数: 1

摘要

背景:斯坦唑是一种新型的小分子,已被认为具有保护多种干细胞的能力。斯坦唑的促增殖活性和良好的神经保护作用使其成为治疗神经退行性疾病的有前景的药物。方法:由于已有研究表明其在极端条件下具有保护作用,为了更全面地了解斯坦唑的作用,本研究采用系统串联质量标签(TMT)标记的蛋白质组学方法,研究在正常条件下使用或不使用斯坦唑的整个蛋白质组表达谱,而不是在极端条件下。采用生物信息学分析,包括基因本体(GO)、京都基因与基因组百科全书(KEGG)途径富集和蛋白-蛋白相互作用(PPI)网络分析。结果:获得了斯坦唑对神经干细胞表达谱的影响。共有408个蛋白在两组的丰度水平上发生了变化:178个蛋白丰度增加,240个蛋白丰度减少。一些线粒体呼吸链酶的低丰度、活性氧(ROS)的过量产生和线粒体膜电位的降低可能表明斯坦唑具有细胞毒性。结论:这是首次对斯坦唑的蛋白质组学研究,也是首次报道了斯坦唑可能的细胞毒性。有关受斯坦唑影响的蛋白质的信息和斯坦唑的更多特征将有助于获得这种小分子药物的完整图像。这些发现为进一步开展斯坦唑治疗研究提供了科学依据。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

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A quantitative proteomics analysis for small molecule Stemazole's effect on human neural stem cells.

Background: Stemazole is a novel small molecule that has been suggested to have the ability to protect multiple stem cells. The proliferation-promoting activity and promising neuroprotective effects of stemazole make it a prospective drug for neurodegenerative disease treatment.

Methods: Since previous studies have shown that it protective effect in extreme conditions, to understand more aspects of stemazole, in this study, a systematic tandem mass tags (TMT)-labelled proteomics approach was used to address the whole proteome expression profile with or without stemazole in normal conditions instead of extreme conditions. Bioinformatics analyses, including Gene Ontology (GO), Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment and protein-protein interaction (PPI) network analyses, were employed.

Results: The effect of stemazole on the expression profiles of neural stem cells was obtained. A total of 408 proteins with changes at the abundance level of two groups were identified: 178 proteins increase in abundance and 240 proteins decrease in abundance, respectively. Low abundance of some mitochondrial respiratory chain enzyme, overproduction of reactive oxygen species (ROS) and reduction of mitochondrial membrane potential may indicate stemazole has cytotoxicity.

Conclusions: It is the first proteomics research about stemazole, and the possible cytotoxicity of stemazole has been reported for the first time. The information about proteins that were affected by stemazole and more characteristics of stemazole will help obtain a complete picture of this small molecule drug. These findings provide a scientific basis for further stemazole treatment research.

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来源期刊
Proteome Science
Proteome Science 生物-生化研究方法
CiteScore
2.90
自引率
0.00%
发文量
17
审稿时长
4.5 months
期刊介绍: Proteome Science is an open access journal publishing research in the area of systems studies. Proteome Science considers manuscripts based on all aspects of functional and structural proteomics, genomics, metabolomics, systems analysis and metabiome analysis. It encourages the submissions of studies that use large-scale or systems analysis of biomolecules in a cellular, organismal and/or environmental context. Studies that describe novel biological or clinical insights as well as methods-focused studies that describe novel methods for the large-scale study of any and all biomolecules in cells and tissues, such as mass spectrometry, protein and nucleic acid microarrays, genomics, next-generation sequencing and computational algorithms and methods are all within the scope of Proteome Science, as are electron topography, structural methods, proteogenomics, chemical proteomics, stem cell proteomics, organelle proteomics, plant and microbial proteomics. In spite of its name, Proteome Science considers all aspects of large-scale and systems studies because ultimately any mechanism that results in genomic and metabolomic changes will affect or be affected by the proteome. To reflect this intrinsic relationship of biological systems, Proteome Science will consider all such articles.
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