一个旨在检测溶液中蛋白质镜像的实验设计大纲。

Osvaldo A Martin, Yury Vorobjev, Harold A Scheraga, Jorge A Vila
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引用次数: 1

摘要

大量的理论证据表明,在蛋白质折叠过程中可能会出现蛋白a的镜像。然而,溶液中是否存在这样的镜像是一个尚未解决的问题。在这里,我们提供了一个旨在检测溶液中蛋白A镜像的实验设计大纲。该建议是基于计算模拟,表明使用蛋白质a的突变体,即Q10H,可以用来检测溶液中的镜像构象。我们的研究结果表明,对于Q10H突变体,蛋白A的天然构象应该具有≈6.2的pKa,而镜像构象的pKa应该接近≈7.3。自然,如果Q10H突变体的所有种群都处于原生状态,pKa应该≈6.2,而如果所有种群都处于镜像状态,pKa应该≈7.3,如果是混合种群,pKa应该大于6.2,大概与镜像种群成比例。此外,有证据表明H10的互变异构分布也必须在天然构象和镜像构象之间发生变化。虽然这可能与确定蛋白A镜像是否存在于溶液中的目的不完全相关,但它可以为验证pKa的发现提供有价值的信息。我们希望这一建议能够通过直接应用我们提出的实验设计或作为其他实验的灵感和动力来促进这个问题的实验工作。
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Outline of an experimental design aimed to detect a protein A mirror image in solution.

There is abundant theoretical evidence indicating that a mirror image of Protein A may occur during the protein folding process. However, as to whether such mirror image exists in solution is an unsolved issue. Here we provide outline of an experimental design aimed to detect the mirror image of Protein A in solution. The proposal is based on computational simulations indicating that the use of a mutant of protein A, namely Q10H, could be used to detect the mirror image conformation in solution. Our results indicate that the native conformation of the protein A should have a pKa, for the Q10H mutant, at ≈6.2, while the mirror-image conformation should have a pKa close to ≈7.3. Naturally, if all the population is in the native state for the Q10H mutant, the pKa should be ≈6.2, while, if all are in the mirror-image state, it would be ≈7.3, and, if it is a mixture, the pKa should be largerthan 6.2, presumably in proportion to the mirror population. In addition, evidence is provided indicating the tautomeric distribution of H10 must also change between the native and mirror conformations. Although this may not be completely relevant for the purpose of determining whether the protein A mirror image exists in solution, it could provide valuable information to validate the pKa findings. We hope this proposal will foster experimental work on this problem either by direct application of our proposed experimental design or serving as inspiration and motivation for other experiments.

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