用于区分COVID-19和胸片上其他肺部异常的深度卷积神经网络:使用内部和外部数据集进行评估

IF 3 4区 计算机科学 Q2 ENGINEERING, ELECTRICAL & ELECTRONIC International Journal of Imaging Systems and Technology Pub Date : 2021-05-13 DOI:10.1002/ima.22595
Yongwon Cho, Sung Ho Hwang, Yu-Whan Oh, Byung-Joo Ham, Min Ju Kim, Beom Jin Park
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引用次数: 2

摘要

我们的目的是评估卷积神经网络(cnn)在使用正常、肺炎和COVID-19胸片(cxr)分类2019冠状病毒病(COVID-19)疾病中的性能。首先,我们从开放数据集中收集了9194例cxr,从高丽大学安岩医院(KUAH)收集了58例cxr。正常病例4580例,肺炎病例3884例,新冠肺炎病例730例。从开放数据集中获得的cxr以70:10:20的比例随机分配到训练集、调优集和测试集。为了进行外部验证,使用了由放射科医生使用计算机断层扫描验证的KUAH数据集(20例正常,20例肺炎和18例COVID-19)。随后,使用DenseNet169、InceptionResNetV2和Xception进行迁移学习,使用开放数据集(内部)和KUAH数据集(外部)进行直方图匹配,识别COVID-19。采用梯度加权类激活映射对异常模式进行可视化。使用开放数据集(内部)时,使用3个5倍以上cnn的多尺度和混合covid - 19net的平均AUC和精度分别为(0.99±0.01和92.94%±0.45%)、(0.99±0.01和93.12%±0.23%)和(0.99±0.01和93.57%±0.29%)。此外,这些值分别为(0.75和74.14%),(0.72和68.97%)和(0.77和68.97%),是使用域自适应与KUAH数据集(外部)进行五次交叉验证的最佳模型。在开放数据集上训练的各种最先进的模型显示出令人满意的临床解释性能。此外,发现外部数据集的域适应对于检测COVID-19以及其他疾病非常重要。
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Deep convolution neural networks to differentiate between COVID-19 and other pulmonary abnormalities on chest radiographs: Evaluation using internal and external datasets

We aimed to evaluate the performance of convolutional neural networks (CNNs) in the classification of coronavirus disease 2019 (COVID-19) disease using normal, pneumonia, and COVID-19 chest radiographs (CXRs). First, we collected 9194 CXRs from open datasets and 58 from the Korea University Anam Hospital (KUAH). The number of normal, pneumonia, and COVID-19 CXRs were 4580, 3884, and 730, respectively. The CXRs obtained from the open dataset were randomly assigned to the training, tuning, and test sets in a 70:10:20 ratio. For external validation, the KUAH (20 normal, 20 pneumonia, and 18 COVID-19) dataset, verified by radiologists using computed tomography, was used. Subsequently, transfer learning was conducted using DenseNet169, InceptionResNetV2, and Xception to identify COVID-19 using open datasets (internal) and the KUAH dataset (external) with histogram matching. Gradient-weighted class activation mapping was used for the visualization of abnormal patterns in CXRs. The average AUC and accuracy of the multiscale and mixed-COVID-19Net using three CNNs over five folds were (0.99 ± 0.01 and 92.94% ± 0.45%), (0.99 ± 0.01 and 93.12% ± 0.23%), and (0.99 ± 0.01 and 93.57% ± 0.29%), respectively, using the open datasets (internal). Furthermore, these values were (0.75 and 74.14%), (0.72 and 68.97%), and (0.77 and 68.97%), respectively, for the best model among the fivefold cross-validation with the KUAH dataset (external) using domain adaptation. The various state-of-the-art models trained on open datasets show satisfactory performance for clinical interpretation. Furthermore, the domain adaptation for external datasets was found to be important for detecting COVID-19 as well as other diseases.

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来源期刊
International Journal of Imaging Systems and Technology
International Journal of Imaging Systems and Technology 工程技术-成像科学与照相技术
CiteScore
6.90
自引率
6.10%
发文量
138
审稿时长
3 months
期刊介绍: The International Journal of Imaging Systems and Technology (IMA) is a forum for the exchange of ideas and results relevant to imaging systems, including imaging physics and informatics. The journal covers all imaging modalities in humans and animals. IMA accepts technically sound and scientifically rigorous research in the interdisciplinary field of imaging, including relevant algorithmic research and hardware and software development, and their applications relevant to medical research. The journal provides a platform to publish original research in structural and functional imaging. The journal is also open to imaging studies of the human body and on animals that describe novel diagnostic imaging and analyses methods. Technical, theoretical, and clinical research in both normal and clinical populations is encouraged. Submissions describing methods, software, databases, replication studies as well as negative results are also considered. The scope of the journal includes, but is not limited to, the following in the context of biomedical research: Imaging and neuro-imaging modalities: structural MRI, functional MRI, PET, SPECT, CT, ultrasound, EEG, MEG, NIRS etc.; Neuromodulation and brain stimulation techniques such as TMS and tDCS; Software and hardware for imaging, especially related to human and animal health; Image segmentation in normal and clinical populations; Pattern analysis and classification using machine learning techniques; Computational modeling and analysis; Brain connectivity and connectomics; Systems-level characterization of brain function; Neural networks and neurorobotics; Computer vision, based on human/animal physiology; Brain-computer interface (BCI) technology; Big data, databasing and data mining.
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