转座因子在免疫和应激条件下的表达。

IF 1.3 4区 生物学 Q4 GENETICS & HEREDITY Genetica Pub Date : 2021-12-01 Epub Date: 2021-08-12 DOI:10.1007/s10709-021-00130-w
Adriana Ludwig, Michelle Orane Schemberger, Camilla Borges Gazolla, Joana de Moura Gama, Iraine Duarte, Ana Luisa Kalb Lopes, Carolina Mathias, Desirrê Alexia Lourenço Petters-Vandresen, Michelle Louise Zattera, Daniel Pacheco Bruschi
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引用次数: 0

摘要

转座因子(te)是真核生物基因组的重要组成部分,约占入侵蟾蜍物种滨海莱茵(Rhinella marina)基因组的30%。考虑到TEs在群体适应中的可能作用,我们分析了该物种在免疫和应激挑战后公开获得的脾脏组织转录组数据中TEs的表达。通过分析转录组组装,我们检测到大量的TE片段。此外,一些不同的TE家族在某些条件下存在差异表达。我们的研究结果表明,有几种te能够在黄貂鱼中转录,它们可以帮助产生对环境的快速反应。此外,我们认为这些te也可能在萌发细胞中被激活,并产生可变性,这些可变性在这种入侵物种成功背后的进化过程中被选择和塑造。因此,在柽柳适应的背景下,TEs是研究的重要目标。
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Transposable elements expression in Rhinella marina (cane toad) specimens submitted to immune and stress challenge.

Transposable elements (TEs) are important components of eukaryotic genomes and compose around 30% of the genome of Rhinella marina, an invasive toad species. Considering the possible role of TEs in the adaptation of populations, we have analyzed the expression of TEs in publicly available spleen tissue transcriptomic data generated for this species after immune and stress challenge. By analyzing the transcriptome assembly, we detected a high number of TE segments. Moreover, some distinct TE families were differentially expressed in some conditions. Our result shows that several TEs are capable of being transcribed in R. marina and they could help to generate a rapid response of specimens to the environment. Also, we can suggest that these TEs could be activated in the germinative cells as well producing variability to be selected and shaped by the evolutionary processes behind the success of this invasive species. Thus, the TEs are important targets for investigation in the context of R. marina adaptation.

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来源期刊
Genetica
Genetica 生物-遗传学
CiteScore
2.70
自引率
0.00%
发文量
32
审稿时长
>12 weeks
期刊介绍: Genetica publishes papers dealing with genetics, genomics, and evolution. Our journal covers novel advances in the fields of genomics, conservation genetics, genotype-phenotype interactions, evo-devo, population and quantitative genetics, and biodiversity. Genetica publishes original research articles addressing novel conceptual, experimental, and theoretical issues in these areas, whatever the taxon considered. Biomedical papers and papers on breeding animal and plant genetics are not within the scope of Genetica, unless framed in an evolutionary context. Recent advances in genetics, genomics and evolution are also published in thematic issues and synthesis papers published by experts in the field.
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