Yongjiang Qian, Lili Zhang, Zhen Sun, Guangyao Zang, Yalan Li, Zhongqun Wang, Lihua Li
{"title":"基于生物信息学分析的动脉粥样硬化患者血液生物标志物研究。","authors":"Yongjiang Qian, Lili Zhang, Zhen Sun, Guangyao Zang, Yalan Li, Zhongqun Wang, Lihua Li","doi":"10.1177/11769343211046020","DOIUrl":null,"url":null,"abstract":"<p><p>Atherosclerosis is a multifaceted disease characterized by the formation and accumulation of plaques that attach to arteries and cause cardiovascular disease and vascular embolism. A range of diagnostic techniques, including selective coronary angiography, stress tests, computerized tomography, and nuclear scans, assess cardiovascular disease risk and treatment targets. However, there is currently no simple blood biochemical index or biological target for the diagnosis of atherosclerosis. Therefore, it is of interest to find a biochemical blood marker for atherosclerosis. Three datasets from the Gene Expression Omnibus (GEO) database were analyzed to obtain differentially expressed genes (DEG) and the results were integrated using the Robustrankaggreg algorithm. The genes considered more critical by the Robustrankaggreg algorithm were put into their own data set and the data set system with cell classification information for verification. Twenty-one possible genes were screened out. Interestingly, we found a good correlation between <i>RPS4Y1</i>, <i>EIF1AY</i>, and <i>XIST</i>. In addition, we know the general expression of these genes in different cell types and whole blood cells. In this study, we identified <i>BTNL8</i> and <i>BLNK</i> as having good clinical significance. These results will contribute to the analysis of the underlying genes involved in the progression of atherosclerosis and provide insights for the discovery of new diagnostic and evaluation methods.</p>","PeriodicalId":50472,"journal":{"name":"Evolutionary Bioinformatics","volume":"17 ","pages":"11769343211046020"},"PeriodicalIF":1.7000,"publicationDate":"2021-09-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://ftp.ncbi.nlm.nih.gov/pub/pmc/oa_pdf/a0/be/10.1177_11769343211046020.PMC8477683.pdf","citationCount":"3","resultStr":"{\"title\":\"Biomarkers of Blood from Patients with Atherosclerosis Based on Bioinformatics Analysis.\",\"authors\":\"Yongjiang Qian, Lili Zhang, Zhen Sun, Guangyao Zang, Yalan Li, Zhongqun Wang, Lihua Li\",\"doi\":\"10.1177/11769343211046020\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>Atherosclerosis is a multifaceted disease characterized by the formation and accumulation of plaques that attach to arteries and cause cardiovascular disease and vascular embolism. A range of diagnostic techniques, including selective coronary angiography, stress tests, computerized tomography, and nuclear scans, assess cardiovascular disease risk and treatment targets. However, there is currently no simple blood biochemical index or biological target for the diagnosis of atherosclerosis. Therefore, it is of interest to find a biochemical blood marker for atherosclerosis. Three datasets from the Gene Expression Omnibus (GEO) database were analyzed to obtain differentially expressed genes (DEG) and the results were integrated using the Robustrankaggreg algorithm. The genes considered more critical by the Robustrankaggreg algorithm were put into their own data set and the data set system with cell classification information for verification. Twenty-one possible genes were screened out. Interestingly, we found a good correlation between <i>RPS4Y1</i>, <i>EIF1AY</i>, and <i>XIST</i>. In addition, we know the general expression of these genes in different cell types and whole blood cells. In this study, we identified <i>BTNL8</i> and <i>BLNK</i> as having good clinical significance. These results will contribute to the analysis of the underlying genes involved in the progression of atherosclerosis and provide insights for the discovery of new diagnostic and evaluation methods.</p>\",\"PeriodicalId\":50472,\"journal\":{\"name\":\"Evolutionary Bioinformatics\",\"volume\":\"17 \",\"pages\":\"11769343211046020\"},\"PeriodicalIF\":1.7000,\"publicationDate\":\"2021-09-24\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://ftp.ncbi.nlm.nih.gov/pub/pmc/oa_pdf/a0/be/10.1177_11769343211046020.PMC8477683.pdf\",\"citationCount\":\"3\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Evolutionary Bioinformatics\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.1177/11769343211046020\",\"RegionNum\":4,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2021/1/1 0:00:00\",\"PubModel\":\"eCollection\",\"JCR\":\"Q4\",\"JCRName\":\"EVOLUTIONARY BIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Evolutionary Bioinformatics","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1177/11769343211046020","RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2021/1/1 0:00:00","PubModel":"eCollection","JCR":"Q4","JCRName":"EVOLUTIONARY BIOLOGY","Score":null,"Total":0}
Biomarkers of Blood from Patients with Atherosclerosis Based on Bioinformatics Analysis.
Atherosclerosis is a multifaceted disease characterized by the formation and accumulation of plaques that attach to arteries and cause cardiovascular disease and vascular embolism. A range of diagnostic techniques, including selective coronary angiography, stress tests, computerized tomography, and nuclear scans, assess cardiovascular disease risk and treatment targets. However, there is currently no simple blood biochemical index or biological target for the diagnosis of atherosclerosis. Therefore, it is of interest to find a biochemical blood marker for atherosclerosis. Three datasets from the Gene Expression Omnibus (GEO) database were analyzed to obtain differentially expressed genes (DEG) and the results were integrated using the Robustrankaggreg algorithm. The genes considered more critical by the Robustrankaggreg algorithm were put into their own data set and the data set system with cell classification information for verification. Twenty-one possible genes were screened out. Interestingly, we found a good correlation between RPS4Y1, EIF1AY, and XIST. In addition, we know the general expression of these genes in different cell types and whole blood cells. In this study, we identified BTNL8 and BLNK as having good clinical significance. These results will contribute to the analysis of the underlying genes involved in the progression of atherosclerosis and provide insights for the discovery of new diagnostic and evaluation methods.
期刊介绍:
Evolutionary Bioinformatics is an open access, peer reviewed international journal focusing on evolutionary bioinformatics. The journal aims to support understanding of organismal form and function through use of molecular, genetic, genomic and proteomic data by giving due consideration to its evolutionary context.