基于生物信息学分析的动脉粥样硬化患者血液生物标志物研究。

IF 1.7 4区 生物学 Q4 EVOLUTIONARY BIOLOGY Evolutionary Bioinformatics Pub Date : 2021-09-24 eCollection Date: 2021-01-01 DOI:10.1177/11769343211046020
Yongjiang Qian, Lili Zhang, Zhen Sun, Guangyao Zang, Yalan Li, Zhongqun Wang, Lihua Li
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引用次数: 3

摘要

动脉粥样硬化是一种多方面的疾病,其特征是斑块的形成和积聚,斑块附着在动脉上,导致心血管疾病和血管栓塞。一系列诊断技术,包括选择性冠状动脉造影、压力测试、计算机断层扫描和核扫描,评估心血管疾病的风险和治疗目标。然而,目前还没有简单的血液生化指标或生物学靶点来诊断动脉粥样硬化。因此,寻找一种动脉粥样硬化的血液生化标志物具有重要意义。通过分析基因表达综合数据库(Gene Expression Omnibus, GEO)中的3个数据集,获得差异表达基因(differential Expression genes, DEG),并使用Robustrankaggreg算法对结果进行整合。将Robustrankaggreg算法认为较为关键的基因分别放入自己的数据集和具有细胞分类信息的数据集系统中进行验证。筛选出21个可能的基因。有趣的是,我们发现RPS4Y1、EIF1AY和XIST之间存在良好的相关性。此外,我们知道这些基因在不同细胞类型和全血细胞中的一般表达。在本研究中,我们发现BTNL8和BLNK具有良好的临床意义。这些结果将有助于分析参与动脉粥样硬化进展的潜在基因,并为发现新的诊断和评估方法提供见解。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

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Biomarkers of Blood from Patients with Atherosclerosis Based on Bioinformatics Analysis.

Atherosclerosis is a multifaceted disease characterized by the formation and accumulation of plaques that attach to arteries and cause cardiovascular disease and vascular embolism. A range of diagnostic techniques, including selective coronary angiography, stress tests, computerized tomography, and nuclear scans, assess cardiovascular disease risk and treatment targets. However, there is currently no simple blood biochemical index or biological target for the diagnosis of atherosclerosis. Therefore, it is of interest to find a biochemical blood marker for atherosclerosis. Three datasets from the Gene Expression Omnibus (GEO) database were analyzed to obtain differentially expressed genes (DEG) and the results were integrated using the Robustrankaggreg algorithm. The genes considered more critical by the Robustrankaggreg algorithm were put into their own data set and the data set system with cell classification information for verification. Twenty-one possible genes were screened out. Interestingly, we found a good correlation between RPS4Y1, EIF1AY, and XIST. In addition, we know the general expression of these genes in different cell types and whole blood cells. In this study, we identified BTNL8 and BLNK as having good clinical significance. These results will contribute to the analysis of the underlying genes involved in the progression of atherosclerosis and provide insights for the discovery of new diagnostic and evaluation methods.

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来源期刊
Evolutionary Bioinformatics
Evolutionary Bioinformatics 生物-进化生物学
CiteScore
4.20
自引率
0.00%
发文量
25
审稿时长
12 months
期刊介绍: Evolutionary Bioinformatics is an open access, peer reviewed international journal focusing on evolutionary bioinformatics. The journal aims to support understanding of organismal form and function through use of molecular, genetic, genomic and proteomic data by giving due consideration to its evolutionary context.
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