绘制淡水蜗牛半硫酸盐螺的基因组。

Q2 Agricultural and Biological Sciences Genomics and Informatics Pub Date : 2021-09-01 Epub Date: 2021-09-30 DOI:10.5808/gi.21039
Jeong-An Gim, Kyung-Wan Baek, Young-Sool Hah, Ho Jin Choo, Ji-Seok Kim, Jun-Il Yoo
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引用次数: 0

摘要

半硫酸盐螺,一种淡水蜗牛,广泛分布于东亚。它是一种重要的食物来源。此外,它是支睾吸虫病、肺吸虫病、吸虫病和其他寄生虫的媒介。尽管这种植物具有生态、商业和临床意义,但其全基因组尚未被报道。在这里,我们通过de novo组装揭示了S. libertina的基因组。我们利用Illumina NovaSeq 6000平台首次组装了S. libertina的全基因组,并测定了其转录组。根据k-mer分析,估计S. libertina的基因组大小为3.04 Gb。使用RepeatMasker,在基因组组装中共鉴定出53.68%的重复序列。本研究报告的金银花基因组数据将为金银花在东亚地区的鉴定和保护提供参考。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

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Draft genome of Semisulcospira libertina, a species of freshwater snail.

Semisulcospira libertina, a species of freshwater snail, is widespread in East Asia. It is important as a food source. Additionally, it is a vector of clonorchiasis, paragonimiasis, metagonimiasis, and other parasites. Although S. libertina has ecological, commercial, and clinical importance, its whole-genome has not been reported yet. Here, we revealed the genome of S. libertina through de novo assembly. We assembled the whole-genome of S. libertina and determined its transcriptome for the first time using Illumina NovaSeq 6000 platform. According to the k-mer analysis, the genome size of S. libertina was estimated to be 3.04 Gb. Using RepeatMasker, a total of 53.68% of repeats were identified in the genome assembly. Genome data of S. libertina reported in this study will be useful for identification and conservation of S. libertina in East Asia.

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来源期刊
Genomics and Informatics
Genomics and Informatics Agricultural and Biological Sciences-Ecology, Evolution, Behavior and Systematics
CiteScore
1.90
自引率
0.00%
发文量
0
审稿时长
12 weeks
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