在非平衡热力学中重新审视模式形成:汉堡型方程。

IF 1.7 4区 工程技术 Q3 COMPUTER SCIENCE, CYBERNETICS Biological Cybernetics Pub Date : 2022-02-01 Epub Date: 2021-11-10 DOI:10.1007/s00422-021-00908-3
Václav Klika
{"title":"在非平衡热力学中重新审视模式形成:汉堡型方程。","authors":"Václav Klika","doi":"10.1007/s00422-021-00908-3","DOIUrl":null,"url":null,"abstract":"<p><p>We revisit the description of reaction-diffusion phenomena within nonequilibrium thermodynamics and investigate the role of a nonstandard splitting of the entropy balance into the entropy production and the divergence of entropy flux. As previously reported by Pavelka et al. (Int J Eng Sci 78:192-217, 2014), a new term is identified following from the kinetic energy of diffusion. This newly appearing term acts as a thermodynamic force driving the reaction kinetics. Using the standard constitutive relations within the linear nonequilibrium thermodynamics, the governing equations for a reaction-diffusion problem in a two-species system are derived. They turn out to be linked to Burgers' equation. It is shown that the onset of stability is not altered, but a non-periodic pattern can emerge. The latter follows from the relation of the governing equation to Burger's equation with a source term. Hence, transients formed by glued and merging parabolic profiles are expected to appear at least in certain parameter regimes. We explore the significance of this effect and observe that for a comparable magnitude of the diffusion and of the new term stemming from the kinetic energy of diffusion, the solution is expected to be linked to the saw-tooth like solution to Burger's equation rather than to the eigenmodes of the Laplacian. We conclude that the reaction-diffusion model proposed by Turing is robust to the addition of this effect of the kinetic energy of diffusion, at least when this new term is sufficiently small. As the governing equations can be rewritten into the classical reaction-diffusion problem but with reaction kinetics outside of the classical law of mass action, the analysis presented in this study suggests that a yet richer behaviour of the classical reaction-diffusion problems can be expected, if nonstandard reaction kinetics are considered.</p>","PeriodicalId":55374,"journal":{"name":"Biological Cybernetics","volume":null,"pages":null},"PeriodicalIF":1.7000,"publicationDate":"2022-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"1","resultStr":"{\"title\":\"Pattern formation revisited within nonequilibrium thermodynamics: Burgers'-type equation.\",\"authors\":\"Václav Klika\",\"doi\":\"10.1007/s00422-021-00908-3\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>We revisit the description of reaction-diffusion phenomena within nonequilibrium thermodynamics and investigate the role of a nonstandard splitting of the entropy balance into the entropy production and the divergence of entropy flux. As previously reported by Pavelka et al. (Int J Eng Sci 78:192-217, 2014), a new term is identified following from the kinetic energy of diffusion. This newly appearing term acts as a thermodynamic force driving the reaction kinetics. Using the standard constitutive relations within the linear nonequilibrium thermodynamics, the governing equations for a reaction-diffusion problem in a two-species system are derived. They turn out to be linked to Burgers' equation. It is shown that the onset of stability is not altered, but a non-periodic pattern can emerge. The latter follows from the relation of the governing equation to Burger's equation with a source term. Hence, transients formed by glued and merging parabolic profiles are expected to appear at least in certain parameter regimes. We explore the significance of this effect and observe that for a comparable magnitude of the diffusion and of the new term stemming from the kinetic energy of diffusion, the solution is expected to be linked to the saw-tooth like solution to Burger's equation rather than to the eigenmodes of the Laplacian. We conclude that the reaction-diffusion model proposed by Turing is robust to the addition of this effect of the kinetic energy of diffusion, at least when this new term is sufficiently small. As the governing equations can be rewritten into the classical reaction-diffusion problem but with reaction kinetics outside of the classical law of mass action, the analysis presented in this study suggests that a yet richer behaviour of the classical reaction-diffusion problems can be expected, if nonstandard reaction kinetics are considered.</p>\",\"PeriodicalId\":55374,\"journal\":{\"name\":\"Biological Cybernetics\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":1.7000,\"publicationDate\":\"2022-02-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"1\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Biological Cybernetics\",\"FirstCategoryId\":\"5\",\"ListUrlMain\":\"https://doi.org/10.1007/s00422-021-00908-3\",\"RegionNum\":4,\"RegionCategory\":\"工程技术\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2021/11/10 0:00:00\",\"PubModel\":\"Epub\",\"JCR\":\"Q3\",\"JCRName\":\"COMPUTER SCIENCE, CYBERNETICS\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Biological Cybernetics","FirstCategoryId":"5","ListUrlMain":"https://doi.org/10.1007/s00422-021-00908-3","RegionNum":4,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2021/11/10 0:00:00","PubModel":"Epub","JCR":"Q3","JCRName":"COMPUTER SCIENCE, CYBERNETICS","Score":null,"Total":0}
引用次数: 1

摘要

我们重新审视了非平衡热力学中反应扩散现象的描述,并研究了熵平衡的非标准分裂在熵产生和熵通量散度中的作用。Pavelka et al. (Int J Eng Sci 78:192-217, 2014)从扩散动能中提出了一个新的术语。这个新出现的项作为一种热力学力来驱动反应动力学。利用线性非平衡热力学中的标准本构关系,导出了两种系统反应扩散问题的控制方程。结果证明它们与伯格方程有关。结果表明,稳定性的开始没有改变,但可以出现非周期性模式。后者由控制方程与带源项的伯格方程的关系得出。因此,由粘接和合并抛物线轮廓形成的瞬态预计至少在某些参数范围内出现。我们探讨了这一效应的意义,并观察到,对于扩散的相当大小和由扩散动能产生的新项,其解有望与伯格方程的锯齿状解联系起来,而不是与拉普拉斯方程的本征模态联系起来。我们得出结论,图灵提出的反应-扩散模型对于加入扩散动能的影响是稳健的,至少当这个新项足够小时是如此。由于控制方程可以改写为经典的反应扩散问题,但反应动力学在经典质量作用定律之外,本研究提出的分析表明,如果考虑非标准反应动力学,可以预期经典反应扩散问题的更丰富的行为。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
Pattern formation revisited within nonequilibrium thermodynamics: Burgers'-type equation.

We revisit the description of reaction-diffusion phenomena within nonequilibrium thermodynamics and investigate the role of a nonstandard splitting of the entropy balance into the entropy production and the divergence of entropy flux. As previously reported by Pavelka et al. (Int J Eng Sci 78:192-217, 2014), a new term is identified following from the kinetic energy of diffusion. This newly appearing term acts as a thermodynamic force driving the reaction kinetics. Using the standard constitutive relations within the linear nonequilibrium thermodynamics, the governing equations for a reaction-diffusion problem in a two-species system are derived. They turn out to be linked to Burgers' equation. It is shown that the onset of stability is not altered, but a non-periodic pattern can emerge. The latter follows from the relation of the governing equation to Burger's equation with a source term. Hence, transients formed by glued and merging parabolic profiles are expected to appear at least in certain parameter regimes. We explore the significance of this effect and observe that for a comparable magnitude of the diffusion and of the new term stemming from the kinetic energy of diffusion, the solution is expected to be linked to the saw-tooth like solution to Burger's equation rather than to the eigenmodes of the Laplacian. We conclude that the reaction-diffusion model proposed by Turing is robust to the addition of this effect of the kinetic energy of diffusion, at least when this new term is sufficiently small. As the governing equations can be rewritten into the classical reaction-diffusion problem but with reaction kinetics outside of the classical law of mass action, the analysis presented in this study suggests that a yet richer behaviour of the classical reaction-diffusion problems can be expected, if nonstandard reaction kinetics are considered.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Biological Cybernetics
Biological Cybernetics 工程技术-计算机:控制论
CiteScore
3.50
自引率
5.30%
发文量
38
审稿时长
6-12 weeks
期刊介绍: Biological Cybernetics is an interdisciplinary medium for theoretical and application-oriented aspects of information processing in organisms, including sensory, motor, cognitive, and ecological phenomena. Topics covered include: mathematical modeling of biological systems; computational, theoretical or engineering studies with relevance for understanding biological information processing; and artificial implementation of biological information processing and self-organizing principles. Under the main aspects of performance and function of systems, emphasis is laid on communication between life sciences and technical/theoretical disciplines.
期刊最新文献
Phase response curves and the role of coordinates. Neuroscientific insights about computer vision models: a concise review. Astrocyte-mediated neuronal irregularities and dynamics: the complexity of the tripartite synapse Can a Hebbian-like learning rule be avoiding the curse of dimensionality in sparse distributed data? Variational analysis of sensory feedback mechanisms in powerstroke-recovery systems.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1