{"title":"伊拉克冠状病毒病患者白细胞介素-37基因多态性与易感性","authors":"Aeshah A. Ahmed , Ali H. Ad'hiah","doi":"10.1016/j.mgene.2021.100989","DOIUrl":null,"url":null,"abstract":"<div><p>Coronavirus disease 19 (COVID-19) is a highly contagious respiratory viral infection. Dysregulated immune response is an important feature of disease, and cytokines are among the most important mediators of dysregulated immunity. Interleukin-37 (IL-37) is one such cytokine and studies have indicated its role in pathogenesis of COVID-19. However, <em>IL37</em> gene polymorphisms have not been identified in patients with COVID-19. Therefore, this case-control study (100 patients and 100 controls) was performed to understand the role six single nucleotide polymorphisms of <em>IL37</em> gene (SNPs: rs3811042, rs3811043, rs2466449, rs3811045, rs3811046 and rs3811047) in susceptibility to COVID-19 among cases with severe disease. These polymorphisms were identified by Sanger DNA sequencing. Results revealed that TG genotype of rs3811046 showed a significantly increased frequency in patients compared to controls (61.0 vs. 38.0%; odds ratio [OR] = 2.55; 95% confidence interval [CI] = 1.45–4.50; probability [<em>p</em>] = 0.002; corrected <em>p</em> [<em>pc</em>] = 0.01). GA genotype of rs3811047 also showed an increased frequency in patients but the <em>pc</em>-value was not significant (39.0 vs. 24.0%; OR = 2.02; 95% CI = 1.10–3.71; <em>p</em> = 0.033; <em>pc</em> = 0.165). Haplotype analysis revealed a significantly increased frequency of the haplotype G-C-A-T-T-A (in the order: rs3811042, rs3811043, rs2466449, rs3811045, rs3811046 and rs3811047) in COVID-19 patients compared to controls (0.055 vs. 0.006; OR = 10.23; 95% CI = 1.53–68.14; <em>p</em> = 0.003; <em>pc</em> = 0.03). In conclusion, the study indicated that two variants of <em>IL37</em> gene (rs3811046 and rs3811047) may be associated with susceptibility to COVID-19 among Iraqi population.</p></div>","PeriodicalId":38190,"journal":{"name":"Meta Gene","volume":"31 ","pages":"Article 100989"},"PeriodicalIF":0.8000,"publicationDate":"2022-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8553418/pdf/","citationCount":"8","resultStr":"{\"title\":\"Interleukin-37 gene polymorphism and susceptibility to coronavirus disease 19 among Iraqi patients\",\"authors\":\"Aeshah A. Ahmed , Ali H. Ad'hiah\",\"doi\":\"10.1016/j.mgene.2021.100989\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><p>Coronavirus disease 19 (COVID-19) is a highly contagious respiratory viral infection. Dysregulated immune response is an important feature of disease, and cytokines are among the most important mediators of dysregulated immunity. Interleukin-37 (IL-37) is one such cytokine and studies have indicated its role in pathogenesis of COVID-19. However, <em>IL37</em> gene polymorphisms have not been identified in patients with COVID-19. Therefore, this case-control study (100 patients and 100 controls) was performed to understand the role six single nucleotide polymorphisms of <em>IL37</em> gene (SNPs: rs3811042, rs3811043, rs2466449, rs3811045, rs3811046 and rs3811047) in susceptibility to COVID-19 among cases with severe disease. These polymorphisms were identified by Sanger DNA sequencing. Results revealed that TG genotype of rs3811046 showed a significantly increased frequency in patients compared to controls (61.0 vs. 38.0%; odds ratio [OR] = 2.55; 95% confidence interval [CI] = 1.45–4.50; probability [<em>p</em>] = 0.002; corrected <em>p</em> [<em>pc</em>] = 0.01). GA genotype of rs3811047 also showed an increased frequency in patients but the <em>pc</em>-value was not significant (39.0 vs. 24.0%; OR = 2.02; 95% CI = 1.10–3.71; <em>p</em> = 0.033; <em>pc</em> = 0.165). Haplotype analysis revealed a significantly increased frequency of the haplotype G-C-A-T-T-A (in the order: rs3811042, rs3811043, rs2466449, rs3811045, rs3811046 and rs3811047) in COVID-19 patients compared to controls (0.055 vs. 0.006; OR = 10.23; 95% CI = 1.53–68.14; <em>p</em> = 0.003; <em>pc</em> = 0.03). In conclusion, the study indicated that two variants of <em>IL37</em> gene (rs3811046 and rs3811047) may be associated with susceptibility to COVID-19 among Iraqi population.</p></div>\",\"PeriodicalId\":38190,\"journal\":{\"name\":\"Meta Gene\",\"volume\":\"31 \",\"pages\":\"Article 100989\"},\"PeriodicalIF\":0.8000,\"publicationDate\":\"2022-02-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8553418/pdf/\",\"citationCount\":\"8\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Meta Gene\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S2214540021001407\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q4\",\"JCRName\":\"GENETICS & HEREDITY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Meta Gene","FirstCategoryId":"1085","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S2214540021001407","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"GENETICS & HEREDITY","Score":null,"Total":0}
引用次数: 8
摘要
冠状病毒病19 (COVID-19)是一种高度传染性呼吸道病毒感染。免疫反应失调是疾病的一个重要特征,而细胞因子是免疫失调最重要的介质之一。白细胞介素-37 (IL-37)就是其中一种细胞因子,研究表明其在COVID-19的发病机制中起着重要作用。然而,在COVID-19患者中尚未发现IL37基因多态性。因此,本研究采用100例患者和100例对照进行病例对照研究,以了解IL37基因的6个单核苷酸多态性(snp: rs3811042、rs3811043、rs2466449、rs3811045、rs3811046和rs3811047)在重症病例中对COVID-19易感性的作用。这些多态性通过Sanger DNA测序进行鉴定。结果显示,TG基因型rs3811046在患者中出现的频率显著高于对照组(61.0 vs. 38.0%;优势比[OR] = 2.55;95%置信区间[CI] = 1.45-4.50;概率[p] = 0.002;校正p [pc] = 0.01)。rs3811047的GA基因型在患者中的出现频率也有所增加,但pc值无显著性差异(39.0比24.0%;or = 2.02;95% ci = 1.10-3.71;p = 0.033;pc = 0.165)。单倍型分析显示,与对照组相比,COVID-19患者中单倍型G-C-A-T-T-A(顺序为rs3811042、rs3811043、rs2466449、rs3811045、rs3811046和rs3811047)的频率显著增加(0.055 vs. 0.006;or = 10.23;95% ci = 1.53-68.14;p = 0.003;pc = 0.03)。总之,该研究表明,IL37基因的两种变异(rs3811046和rs3811047)可能与伊拉克人群对COVID-19的易感性有关。
Interleukin-37 gene polymorphism and susceptibility to coronavirus disease 19 among Iraqi patients
Coronavirus disease 19 (COVID-19) is a highly contagious respiratory viral infection. Dysregulated immune response is an important feature of disease, and cytokines are among the most important mediators of dysregulated immunity. Interleukin-37 (IL-37) is one such cytokine and studies have indicated its role in pathogenesis of COVID-19. However, IL37 gene polymorphisms have not been identified in patients with COVID-19. Therefore, this case-control study (100 patients and 100 controls) was performed to understand the role six single nucleotide polymorphisms of IL37 gene (SNPs: rs3811042, rs3811043, rs2466449, rs3811045, rs3811046 and rs3811047) in susceptibility to COVID-19 among cases with severe disease. These polymorphisms were identified by Sanger DNA sequencing. Results revealed that TG genotype of rs3811046 showed a significantly increased frequency in patients compared to controls (61.0 vs. 38.0%; odds ratio [OR] = 2.55; 95% confidence interval [CI] = 1.45–4.50; probability [p] = 0.002; corrected p [pc] = 0.01). GA genotype of rs3811047 also showed an increased frequency in patients but the pc-value was not significant (39.0 vs. 24.0%; OR = 2.02; 95% CI = 1.10–3.71; p = 0.033; pc = 0.165). Haplotype analysis revealed a significantly increased frequency of the haplotype G-C-A-T-T-A (in the order: rs3811042, rs3811043, rs2466449, rs3811045, rs3811046 and rs3811047) in COVID-19 patients compared to controls (0.055 vs. 0.006; OR = 10.23; 95% CI = 1.53–68.14; p = 0.003; pc = 0.03). In conclusion, the study indicated that two variants of IL37 gene (rs3811046 and rs3811047) may be associated with susceptibility to COVID-19 among Iraqi population.
Meta GeneBiochemistry, Genetics and Molecular Biology-Genetics
CiteScore
1.10
自引率
0.00%
发文量
20
期刊介绍:
Meta Gene publishes meta-analysis, polymorphism and population study papers that are relevant to both human and non-human species. Examples include but are not limited to: (Relevant to human specimens): 1Meta-Analysis Papers - statistical reviews of the published literature of human genetic variation (typically linked to medical conditionals and/or congenital diseases) 2Genome Wide Association Studies (GWAS) - examination of large patient cohorts to identify common genetic factors that influence health and disease 3Human Genetics Papers - original studies describing new data on genetic variation in smaller patient populations 4Genetic Case Reports - short communications describing novel and in formative genetic mutations or chromosomal aberrations (e.g., probands) in very small demographic groups (e.g., family or unique ethnic group). (Relevant to non-human specimens): 1Small Genome Papers - Analysis of genetic variation in organelle genomes (e.g., mitochondrial DNA) 2Microbiota Papers - Analysis of microbiological variation through analysis of DNA sequencing in different biological environments 3Ecological Diversity Papers - Geographical distribution of genetic diversity of zoological or botanical species.