BayesCTDesign:一个使用历史控制数据的贝叶斯试验设计R包。

IF 5.4 2区 计算机科学 Q1 COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS Journal of Statistical Software Pub Date : 2021-01-01 Epub Date: 2021-11-30 DOI:10.18637/jss.v100.i21
Barry S Eggleston, Joseph G Ibrahim, Becky McNeil, Diane Catellier
{"title":"BayesCTDesign:一个使用历史控制数据的贝叶斯试验设计R包。","authors":"Barry S Eggleston,&nbsp;Joseph G Ibrahim,&nbsp;Becky McNeil,&nbsp;Diane Catellier","doi":"10.18637/jss.v100.i21","DOIUrl":null,"url":null,"abstract":"<p><p>This article introduces the R (R Core Team 2019) package <b>BayesCTDesign</b> for two-arm randomized Bayesian trial design using historical control data when available, and simple two-arm randomized Bayesian trial design when historical control data is not available. The package <b>BayesCTDesign</b>, which is available on CRAN, has two simulation functions, historic_sim() and simple_sim() for studying trial characteristics under user defined scenarios, and two methods print() and plot() for displaying summaries of the simulated trial characteristics. The package <b>BayesCTDesign</b> works with two-arm trials with equal sample sizes per arm. The package <b>BayesCTDesign</b> allows a user to study Gaussian, Poisson, Bernoulli, Weibull, Lognormal, and Piecewise Exponential (pwe) outcomes. Power for two-sided hypothesis tests at a user defined alpha is estimated via simulation using a test within each simulation replication that involves comparing a 95% credible interval for the outcome specific treatment effect measure to the null case value. If the 95% credible interval excludes the null case value, then the null hypothesis is rejected, else the null hypothesis is accepted. In the article, the idea of including historical control data in a Bayesian analysis is reviewed, the estimation process of <b>BayesCTDesign</b> is explained, and the user interface is described. Finally, the <b>BayesCTDesign</b> is illustrated via several examples.</p>","PeriodicalId":17237,"journal":{"name":"Journal of Statistical Software","volume":"100 21","pages":""},"PeriodicalIF":5.4000,"publicationDate":"2021-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8715862/pdf/nihms-1661326.pdf","citationCount":"1","resultStr":"{\"title\":\"BayesCTDesign: An R Package for Bayesian Trial Design Using Historical Control Data.\",\"authors\":\"Barry S Eggleston,&nbsp;Joseph G Ibrahim,&nbsp;Becky McNeil,&nbsp;Diane Catellier\",\"doi\":\"10.18637/jss.v100.i21\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>This article introduces the R (R Core Team 2019) package <b>BayesCTDesign</b> for two-arm randomized Bayesian trial design using historical control data when available, and simple two-arm randomized Bayesian trial design when historical control data is not available. The package <b>BayesCTDesign</b>, which is available on CRAN, has two simulation functions, historic_sim() and simple_sim() for studying trial characteristics under user defined scenarios, and two methods print() and plot() for displaying summaries of the simulated trial characteristics. The package <b>BayesCTDesign</b> works with two-arm trials with equal sample sizes per arm. The package <b>BayesCTDesign</b> allows a user to study Gaussian, Poisson, Bernoulli, Weibull, Lognormal, and Piecewise Exponential (pwe) outcomes. Power for two-sided hypothesis tests at a user defined alpha is estimated via simulation using a test within each simulation replication that involves comparing a 95% credible interval for the outcome specific treatment effect measure to the null case value. If the 95% credible interval excludes the null case value, then the null hypothesis is rejected, else the null hypothesis is accepted. In the article, the idea of including historical control data in a Bayesian analysis is reviewed, the estimation process of <b>BayesCTDesign</b> is explained, and the user interface is described. Finally, the <b>BayesCTDesign</b> is illustrated via several examples.</p>\",\"PeriodicalId\":17237,\"journal\":{\"name\":\"Journal of Statistical Software\",\"volume\":\"100 21\",\"pages\":\"\"},\"PeriodicalIF\":5.4000,\"publicationDate\":\"2021-01-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8715862/pdf/nihms-1661326.pdf\",\"citationCount\":\"1\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of Statistical Software\",\"FirstCategoryId\":\"94\",\"ListUrlMain\":\"https://doi.org/10.18637/jss.v100.i21\",\"RegionNum\":2,\"RegionCategory\":\"计算机科学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2021/11/30 0:00:00\",\"PubModel\":\"Epub\",\"JCR\":\"Q1\",\"JCRName\":\"COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Statistical Software","FirstCategoryId":"94","ListUrlMain":"https://doi.org/10.18637/jss.v100.i21","RegionNum":2,"RegionCategory":"计算机科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2021/11/30 0:00:00","PubModel":"Epub","JCR":"Q1","JCRName":"COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS","Score":null,"Total":0}
引用次数: 1

摘要

本文介绍了R(R Core Team 2019)软件包BayesCTDesign,用于在可用的情况下使用历史对照数据进行双臂随机贝叶斯试验设计,以及在没有历史对照数据时进行简单的双臂随机贝叶斯试验设计。CRAN上提供的包BayesCTDesign有两个模拟函数,historic_sim()和simple_sim(。BayesCTDesign软件包适用于两个手臂试验,每个手臂的样本量相等。包BayesCTDesign允许用户研究高斯、泊松、伯努利、威布尔、对数正态和逐段指数(pwe)结果。通过在每个模拟复制中使用测试的模拟来估计用户定义的α下的双侧假设测试的功率,该测试涉及将结果特异性治疗效果测量的95%可信区间与零病例值进行比较。如果95%可信区间排除了零情况值,则拒绝零假设,否则接受零假设。本文回顾了将历史控制数据纳入贝叶斯分析的思想,解释了贝叶斯设计的估计过程,并描述了用户界面。最后,通过几个例子说明了贝叶斯TDesign。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
BayesCTDesign: An R Package for Bayesian Trial Design Using Historical Control Data.

This article introduces the R (R Core Team 2019) package BayesCTDesign for two-arm randomized Bayesian trial design using historical control data when available, and simple two-arm randomized Bayesian trial design when historical control data is not available. The package BayesCTDesign, which is available on CRAN, has two simulation functions, historic_sim() and simple_sim() for studying trial characteristics under user defined scenarios, and two methods print() and plot() for displaying summaries of the simulated trial characteristics. The package BayesCTDesign works with two-arm trials with equal sample sizes per arm. The package BayesCTDesign allows a user to study Gaussian, Poisson, Bernoulli, Weibull, Lognormal, and Piecewise Exponential (pwe) outcomes. Power for two-sided hypothesis tests at a user defined alpha is estimated via simulation using a test within each simulation replication that involves comparing a 95% credible interval for the outcome specific treatment effect measure to the null case value. If the 95% credible interval excludes the null case value, then the null hypothesis is rejected, else the null hypothesis is accepted. In the article, the idea of including historical control data in a Bayesian analysis is reviewed, the estimation process of BayesCTDesign is explained, and the user interface is described. Finally, the BayesCTDesign is illustrated via several examples.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Journal of Statistical Software
Journal of Statistical Software 工程技术-计算机:跨学科应用
CiteScore
10.70
自引率
1.70%
发文量
40
审稿时长
6-12 weeks
期刊介绍: The Journal of Statistical Software (JSS) publishes open-source software and corresponding reproducible articles discussing all aspects of the design, implementation, documentation, application, evaluation, comparison, maintainance and distribution of software dedicated to improvement of state-of-the-art in statistical computing in all areas of empirical research. Open-source code and articles are jointly reviewed and published in this journal and should be accessible to a broad community of practitioners, teachers, and researchers in the field of statistics.
期刊最新文献
spsurvey: Spatial Sampling Design and Analysis in R. Application of Equal Local Levels to Improve Q-Q Plot Testing Bands with R Package qqconf. Elastic Net Regularization Paths for All Generalized Linear Models. Broken Stick Model for Irregular Longitudinal Data jumpdiff: A Python Library for Statistical Inference of Jump-Diffusion Processes in Observational or Experimental Data Sets
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1