加那利群岛泰德国家公园土壤中生长的Spartocytisus supranubius根瘤中,内生菌Bosea spartocytisi sp. 11 .与根瘤菌共存。

IF 3.3 2区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Systematic and applied microbiology Pub Date : 2022-11-01 DOI:10.1016/j.syapm.2022.126374
Laura Pulido-Suárez , José David Flores-Félix , Noemí Socas-Pérez , José M. Igual , Encarna Velázquez , Álvaro Péix , Milagros León-Barrios
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引用次数: 2

摘要

从西班牙特内里费岛Teide国家公园土壤中的Spartocytisus supranubius根瘤中分离到2株杆状革兰氏阴性菌株SSUT16T和SSUT22。这两个新菌株的16S rRNA基因序列与该属其他种的相似度在97.65% ~ 99.54%之间,属于Bosea属。recA和gyrB基因序列的MLSA分析表明,Bosea thioooxidans LMG 26210T和B. robiniae LMG 26381T是Bosea thioooxidans LMG 26210T和B. robiniae LMG 26381T是两个最近的亲缘物种,它们的相似度分别为94.42%和94.27%。菌株SSUT16T的基因组序列分析显示,其与Bosea属所有物种的平均核苷酸同源率(ANIb)和数字DNA-DNA杂交率(dDDH)分别低于84%和33%。这些值远低于目前公认的这两个参数划分细菌种类的临界值,证实了新菌株构成了一个新的Bosea物种。此外,它们在脂肪酸组成和其他表型特征上也与其他最接近的物种不同。基因组序列分析显示,新菌株缺乏常见的结瘤和固氮基因。因此,基于系统发育、基因组学、化学分类和表型鉴定结果,我们提出了一个新种,命名为Bosea spartocytisi sp. nov.,类型菌株SSUT16T (=LMG 32510T = CECT 30526T = HAMBI 3759T)。
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Endophytic Bosea spartocytisi sp. nov. Coexists with rhizobia in root nodules of Spartocytisus supranubius growing in soils of Teide National Park (Canary Islands)

Two rod-shaped Gram negative strains, SSUT16T and SSUT22, were isolated from root nodules of Spartocytisus supranubius in soils of the Teide National Park (Tenerife, Spain). The 16S rRNA gene sequences of these two novel strains classified them within genus Bosea with similarity values ranging from 97.65 % to 99.54 % with respect to the other species of this genus. The MLSA analysis from a concatenation of the two housekeeping- genes, recA and gyrB, showed that Bosea thiooxidans LMG 26210T and B. robiniae LMG 26381T are the two closest relative species with which they share similarity sequences values of 94.42 % and 94.27 %, respectively. The genome sequence analysis of strain SSUT16T showed average nucleotide identity percentages (ANIb) and digital DNA-DNA hybridization (dDDH) below 84 % and 33 %, respectively, with the type strains of all sequenced species of genus Bosea. These values are much lower than the currently accepted cut-off values for these two parameters to delineate bacterial species, confirming that the novel strains constitute a novel Bosea species. In addition, they are also distinguished from the other closest species in their fatty acid composition and in other phenotypic characteristics. Genome sequence analysis showed the absence of the common nodulation and nitrogen fixation genes in the novel strains. Therefore, based on the results of phylogenetic, genomic, chemotaxonomic and phenotypic characterization, we propose a new species named Bosea spartocytisi sp. nov., with type strain SSUT16T (=LMG 32510T = CECT 30526T = HAMBI 3759T).

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来源期刊
Systematic and applied microbiology
Systematic and applied microbiology 生物-生物工程与应用微生物
CiteScore
7.50
自引率
5.90%
发文量
57
审稿时长
22 days
期刊介绍: Systematic and Applied Microbiology deals with various aspects of microbial diversity and systematics of prokaryotes. It focuses on Bacteria and Archaea; eukaryotic microorganisms will only be considered in rare cases. The journal perceives a broad understanding of microbial diversity and encourages the submission of manuscripts from the following branches of microbiology:
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