骆驼奶外泌体中微小RNA的测序和分析。

IF 0.7 4区 农林科学 Q3 VETERINARY SCIENCES Acta veterinaria Hungarica Pub Date : 2023-09-19 DOI:10.1556/004.2023.00869
Rinile Wu, Caifeng Yue, Yina Xie, Yuerong Fu, Xin Yu, Zhuoyuan Li, Bin Yang
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引用次数: 0

摘要

为了研究骆驼奶外泌体中微小RNA的种类和功能,采用Illumina测序技术对非编码微小RNA进行了测序和鉴定,并用生物信息学方法对微小RNA组分进行了分析。质量控制后,骆驼乳外泌体sRNA的平均长度为18-24个核苷酸。共鉴定出2659个miRNA,包括2458个已知miRNA和201个新miRNA。在已知的miRNA中,miR-148a和let-7i的表达水平最高。基因本体富集分析结果表明,骆驼乳外泌体miRNA的靶基因参与了多细胞生物、分解代谢等生物学过程。它们在细胞外区域、细胞骨架和其他细胞成分、蛋白质结合中发挥作用,但也具有结构分子活性和其他分子功能。根据《京都基因与基因组百科全书》通路富集分析结果,骆驼乳外泌体miRNA的靶基因参与阿尔茨海默病、非酒精性脂肪肝、金黄色葡萄球菌感染等病理通路。我们推测,骆驼奶在各种病理条件下的有益作用可能与外泌体miRNA对疾病靶基因的调节功能密切相关。
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Sequencing and analysis of micro RNAs in camel milk exosomes.

In order to study the species and functions of micro (mi)RNAs in the exosomes of camel milk, non-coding small (s)RNAs were sequenced and identified by Illumina sequencing technology, and the miRNA fraction was analysed by bioinformatics. After quality control, the average length of sRNA of camel milk exosomes was 18-24 nucleotides. A total of 2,659 miRNAs were identified, including 2,458 known, and 201 new miRNAs. Among the known miRNAs, miR-148a and let-7i had the highest expression levels. The results of gene ontology enrichment analysis indicated that the target genes of camel milk exosome miRNAs were involved in multicellular organismal, catabolic and other biological processes. They play role in the extracellular region, in the cytoskeleton and other cell components, in protein binding, but also have structural molecule activity and other molecular functions. According to the results of the Kyoto Encyclopedia of Genes and Genomes pathway enrichment analysis, the target genes of camel milk exosome miRNAs are involved in Alzheimer's disease, non-alcoholic fatty liver disease, Staphylococcus aureus infection and other pathological pathways. We speculate that the reported beneficial effect of camel milk in various pathologic conditions may be closely related to the regulatory function of the exosomal miRNAs exerted on target genes of the diseases.

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来源期刊
Acta veterinaria Hungarica
Acta veterinaria Hungarica 农林科学-兽医学
CiteScore
1.80
自引率
0.00%
发文量
39
审稿时长
>36 weeks
期刊介绍: Acta Veterinaria Hungarica publishes original research papers presenting new scientific results of international interest, and to a limited extent also review articles and clinical case reports, on veterinary physiology (physiological chemistry and metabolism), veterinary microbiology (bacteriology, virology, immunology, molecular biology), on the infectious diseases of domestic animals, on veterinary parasitology, pathology, clinical veterinary science and reproduction.
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