肽的能量景观和热容特征与相分离倾向相关。

Q3 Biochemistry, Genetics and Molecular Biology QRB Discovery Pub Date : 2023-09-05 eCollection Date: 2023-01-01 DOI:10.1017/qrd.2023.5
Nicy, Rosana Collepardo-Guevara, Jerelle A Joseph, David J Wales
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引用次数: 1

摘要

相分离在细胞内无膜区室的形成中起着重要作用,具有低复杂性序列的内在无序蛋白质可以驱动这种区室化。各种分子间作用力,如芳香族和阳离子-芳香族相互作用,促进相分离。然而,人们对蛋白质在生理条件下相分离的能力是如何在其能量景观中编码的知之甚少,这是目前研究的重点。我们的研究结果首次揭示了含有和阳离子相互作用的最小肽与缺乏具有这种相互作用的氨基酸的肽的能量景观是如何不同的。热容()的峰值作为温度的函数,报告了在焓和熵贡献方面显著不同的替代低地构象。对能源景观挫折感的分析和随后的量化表明,促进相分离的相互作用导致了低温下的特征(峰值或拐点)。对于含有具有更好相分离倾向的残基的肽,可能会出现更多的特征,并且对于这样的肽,能量景观更加受挫。总的来说,这项工作将潜在的单分子势能景观中的特征与其集体相分离行为联系起来,并确定了可用于软材料设计的数量(和挫败度指标)。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

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Energy landscapes and heat capacity signatures for peptides correlate with phase separation propensity.

Phase separation plays an important role in the formation of membraneless compartments within the cell and intrinsically disordered proteins with low-complexity sequences can drive this compartmentalisation. Various intermolecular forces, such as aromatic-aromatic and cation-aromatic interactions, promote phase separation. However, little is known about how the ability of proteins to phase separate under physiological conditions is encoded in their energy landscapes and this is the focus of the present investigation. Our results provide a first glimpse into how the energy landscapes of minimal peptides that contain - and cation- interactions differ from the peptides that lack amino acids with such interactions. The peaks in the heat capacity () as a function of temperature report on alternative low-lying conformations that differ significantly in terms of their enthalpic and entropic contributions. The analysis and subsequent quantification of frustration of the energy landscape suggest that the interactions that promote phase separation lead to features (peaks or inflection points) at low temperatures in . More features may occur for peptides containing residues with better phase separation propensity and the energy landscape is more frustrated for such peptides. Overall, this work links the features in the underlying single-molecule potential energy landscapes to their collective phase separation behaviour and identifies quantities ( and frustration metric) that can be utilised in soft material design.

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来源期刊
QRB Discovery
QRB Discovery Biochemistry, Genetics and Molecular Biology-Biophysics
CiteScore
3.60
自引率
0.00%
发文量
18
审稿时长
12 weeks
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