理解多发病需要信号-疾病网络和高阶相互作用,从一个角度来看。

Frontiers in systems biology Pub Date : 2023-01-01 Epub Date: 2023-06-06 DOI:10.3389/fsysb.2023.1155599
Cillian Hourican, Geeske Peeters, René Melis, Thomas M Gill, Marcel Olde Rikkert, Rick Quax
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引用次数: 0

摘要

背景:尽管存在两个主要缺点,但计数得分、疾病聚类和疾病之间的成对关联在多发病率研究中仍然普遍存在:它们没有深入了解多发病率的潜在机制,并且忽略了更高阶的相互作用,如效果修饰。目的:我们认为目前缺少两个组成部分,但对开发新的多发病率指标至关重要。首先,应该构建同时由体征、症状和疾病组成的网络,因为只有这样,它们才能深入了解潜在疾病的可能的共同生物学机制。其次,学习成对关联不足以完全表征系统中的相关性。也就是说,协同效应(例如,合作或拮抗)在复杂系统中广泛存在,其中两个或多个元素组合在一起产生的效应大于或小于其单个效应的总和。甚至可能出现成对的症状没有任何成对的关联,但在组合中有显著的关联。因此,高阶相互作用应该包括在用于研究多轨道的网络中,从而产生所谓的超图。方法:我们使用症状、体征和疾病的合成贝叶斯网络模型来说明我们的论点,该模型由成对和高阶相互作用组成。我们在个人和人群层面模拟网络干预,并将基本事实结果与成对关联的预测进行比较。结论:我们发现,当纯粹从配对关联来判断时,干预措施可能会产生意想不到的“副作用”,或者可能会错过最合适的干预措施。超图揭示了成对网络中缺失的链接,对体征和疾病关联进行了更全面的概述。
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Understanding multimorbidity requires sign-disease networks and higher-order interactions, a perspective.

Background: Count scores, disease clustering, and pairwise associations between diseases remain ubiquitous in multimorbidity research despite two major shortcomings: they yield no insight into plausible mechanisms underlying multimorbidity, and they ignore higher-order interactions such as effect modification.

Objectives: We argue that two components are currently missing but vital to develop novel multimorbidity metrics. Firstly, networks should be constructed which consists simultaneously of signs, symptoms, and diseases, since only then could they yield insight into plausible shared biological mechanisms underlying diseases.Secondly, learning pairwise associations is insufficient to fully characterize the correlations in a system. That is, synergistic (e.g., cooperative or antagonistic) effects are widespread in complex systems, where two or more elements combined give a larger or smaller effect than the sum of their individual effects. It can even occur that pairs of symptoms have no pairwise associations whatsoever, but in combination have a significant association. Therefore, higher-order interactions should be included in networks used to study multimorbidity, resulting in so-called hypergraphs.

Methods: We illustrate our argument using a synthetic Bayesian Network model of symptoms, signs and diseases, composed of pairwise and higher-order interactions. We simulate network interventions on both individual and population levels and compare the ground-truth outcomes with the predictions from pairwise associations.

Conclusion: We find that, when judged purely from the pairwise associations, interventions can have unexpected 'side-effects' or the most opportune intervention could be missed. The hypergraph uncovers links missed in pairwise networks, giving a more complete overview of sign and disease associations.

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