通过全息流式细胞术中无染色生物标志物的智能检测对神经母细胞瘤细胞进行表型分析。

IF 6.6 3区 医学 Q1 ENGINEERING, BIOMEDICAL APL Bioengineering Pub Date : 2023-09-21 eCollection Date: 2023-09-01 DOI:10.1063/5.0159399
Daniele Pirone, Annalaura Montella, Daniele Sirico, Martina Mugnano, Danila Del Giudice, Ivana Kurelac, Matilde Tirelli, Achille Iolascon, Vittorio Bianco, Pasquale Memmolo, Mario Capasso, Lisa Miccio, Pietro Ferraro
{"title":"通过全息流式细胞术中无染色生物标志物的智能检测对神经母细胞瘤细胞进行表型分析。","authors":"Daniele Pirone,&nbsp;Annalaura Montella,&nbsp;Daniele Sirico,&nbsp;Martina Mugnano,&nbsp;Danila Del Giudice,&nbsp;Ivana Kurelac,&nbsp;Matilde Tirelli,&nbsp;Achille Iolascon,&nbsp;Vittorio Bianco,&nbsp;Pasquale Memmolo,&nbsp;Mario Capasso,&nbsp;Lisa Miccio,&nbsp;Pietro Ferraro","doi":"10.1063/5.0159399","DOIUrl":null,"url":null,"abstract":"<p><p>To efficiently tackle certain tumor types, finding new biomarkers for rapid and complete phenotyping of cancer cells is highly demanded. This is especially the case for the most common pediatric solid tumor of the sympathetic nervous system, namely, neuroblastoma (NB). Liquid biopsy is in principle a very promising tool for this purpose, but usually enrichment and isolation of circulating tumor cells in such patients remain difficult due to the unavailability of universal NB cell-specific surface markers. Here, we show that rapid screening and phenotyping of NB cells through stain-free biomarkers supported by artificial intelligence is a viable route for liquid biopsy. We demonstrate the concept through a flow cytometry based on label-free holographic quantitative phase-contrast microscopy empowered by machine learning. In detail, we exploit a hierarchical decision scheme where at first level NB cells are classified from monocytes with 97.9% accuracy. Then we demonstrate that different phenotypes are discriminated within NB class. Indeed, for each cell classified as NB its belonging to one of four NB sub-populations (i.e., CHP212, SKNBE2, SHSY5Y, and SKNSH) is evaluated thus achieving accuracy in the range 73.6%-89.1%. The achieved results solve the realistic problem related to the identification circulating tumor cell, i.e., the possibility to recognize and detect tumor cells morphologically similar to blood cells, which is the core issue in liquid biopsy based on stain-free microscopy. The presented approach operates at lab-on-chip scale and emulates real-world scenarios, thus representing a future route for liquid biopsy by exploiting intelligent biomedical imaging.</p>","PeriodicalId":46288,"journal":{"name":"APL Bioengineering","volume":"7 3","pages":"036118"},"PeriodicalIF":6.6000,"publicationDate":"2023-09-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10519746/pdf/","citationCount":"0","resultStr":"{\"title\":\"Phenotyping neuroblastoma cells through intelligent scrutiny of stain-free biomarkers in holographic flow cytometry.\",\"authors\":\"Daniele Pirone,&nbsp;Annalaura Montella,&nbsp;Daniele Sirico,&nbsp;Martina Mugnano,&nbsp;Danila Del Giudice,&nbsp;Ivana Kurelac,&nbsp;Matilde Tirelli,&nbsp;Achille Iolascon,&nbsp;Vittorio Bianco,&nbsp;Pasquale Memmolo,&nbsp;Mario Capasso,&nbsp;Lisa Miccio,&nbsp;Pietro Ferraro\",\"doi\":\"10.1063/5.0159399\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>To efficiently tackle certain tumor types, finding new biomarkers for rapid and complete phenotyping of cancer cells is highly demanded. This is especially the case for the most common pediatric solid tumor of the sympathetic nervous system, namely, neuroblastoma (NB). Liquid biopsy is in principle a very promising tool for this purpose, but usually enrichment and isolation of circulating tumor cells in such patients remain difficult due to the unavailability of universal NB cell-specific surface markers. Here, we show that rapid screening and phenotyping of NB cells through stain-free biomarkers supported by artificial intelligence is a viable route for liquid biopsy. We demonstrate the concept through a flow cytometry based on label-free holographic quantitative phase-contrast microscopy empowered by machine learning. In detail, we exploit a hierarchical decision scheme where at first level NB cells are classified from monocytes with 97.9% accuracy. Then we demonstrate that different phenotypes are discriminated within NB class. Indeed, for each cell classified as NB its belonging to one of four NB sub-populations (i.e., CHP212, SKNBE2, SHSY5Y, and SKNSH) is evaluated thus achieving accuracy in the range 73.6%-89.1%. The achieved results solve the realistic problem related to the identification circulating tumor cell, i.e., the possibility to recognize and detect tumor cells morphologically similar to blood cells, which is the core issue in liquid biopsy based on stain-free microscopy. The presented approach operates at lab-on-chip scale and emulates real-world scenarios, thus representing a future route for liquid biopsy by exploiting intelligent biomedical imaging.</p>\",\"PeriodicalId\":46288,\"journal\":{\"name\":\"APL Bioengineering\",\"volume\":\"7 3\",\"pages\":\"036118\"},\"PeriodicalIF\":6.6000,\"publicationDate\":\"2023-09-21\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10519746/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"APL Bioengineering\",\"FirstCategoryId\":\"5\",\"ListUrlMain\":\"https://doi.org/10.1063/5.0159399\",\"RegionNum\":3,\"RegionCategory\":\"医学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2023/9/1 0:00:00\",\"PubModel\":\"eCollection\",\"JCR\":\"Q1\",\"JCRName\":\"ENGINEERING, BIOMEDICAL\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"APL Bioengineering","FirstCategoryId":"5","ListUrlMain":"https://doi.org/10.1063/5.0159399","RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2023/9/1 0:00:00","PubModel":"eCollection","JCR":"Q1","JCRName":"ENGINEERING, BIOMEDICAL","Score":null,"Total":0}
引用次数: 0

摘要

为了有效应对某些肿瘤类型,迫切需要找到新的生物标志物来快速和完整地进行癌症细胞的表型分型。最常见的儿童交感神经系统实体瘤,即神经母细胞瘤(NB)尤其如此。液体活检原则上是一种非常有前景的工具,但由于缺乏通用的NB细胞特异性表面标记物,通常很难在此类患者中富集和分离循环肿瘤细胞。在这里,我们表明,通过人工智能支持的无染色生物标志物对NB细胞进行快速筛查和表型分析是液体活检的可行途径。我们通过基于无标记全息定量相位对比显微镜的流式细胞术证明了这一概念,该显微镜由机器学习授权。详细地说,我们开发了一种分层决策方案,其中在第一级,NB细胞从单核细胞中分类,准确率为97.9%。然后我们证明了NB类中不同表型是有区别的。事实上,对于每一个被分类为NB的细胞,其属于四个NB亚群(即CHP212、SKNBE2、SHSY5Y和SKNSH)中的一个进行了评估,从而实现了73.6%-89.1%的准确率。所获得的结果解决了与识别循环肿瘤细胞相关的现实问题,即识别和检测与血细胞形态相似的肿瘤细胞的可能性,这是基于无染色显微镜的液体活检的核心问题。所提出的方法在芯片规模的实验室中运行,并模拟真实世界的场景,从而代表了通过利用智能生物医学成像进行液体活检的未来路线。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

摘要图片

摘要图片

摘要图片

查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
Phenotyping neuroblastoma cells through intelligent scrutiny of stain-free biomarkers in holographic flow cytometry.

To efficiently tackle certain tumor types, finding new biomarkers for rapid and complete phenotyping of cancer cells is highly demanded. This is especially the case for the most common pediatric solid tumor of the sympathetic nervous system, namely, neuroblastoma (NB). Liquid biopsy is in principle a very promising tool for this purpose, but usually enrichment and isolation of circulating tumor cells in such patients remain difficult due to the unavailability of universal NB cell-specific surface markers. Here, we show that rapid screening and phenotyping of NB cells through stain-free biomarkers supported by artificial intelligence is a viable route for liquid biopsy. We demonstrate the concept through a flow cytometry based on label-free holographic quantitative phase-contrast microscopy empowered by machine learning. In detail, we exploit a hierarchical decision scheme where at first level NB cells are classified from monocytes with 97.9% accuracy. Then we demonstrate that different phenotypes are discriminated within NB class. Indeed, for each cell classified as NB its belonging to one of four NB sub-populations (i.e., CHP212, SKNBE2, SHSY5Y, and SKNSH) is evaluated thus achieving accuracy in the range 73.6%-89.1%. The achieved results solve the realistic problem related to the identification circulating tumor cell, i.e., the possibility to recognize and detect tumor cells morphologically similar to blood cells, which is the core issue in liquid biopsy based on stain-free microscopy. The presented approach operates at lab-on-chip scale and emulates real-world scenarios, thus representing a future route for liquid biopsy by exploiting intelligent biomedical imaging.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
APL Bioengineering
APL Bioengineering ENGINEERING, BIOMEDICAL-
CiteScore
9.30
自引率
6.70%
发文量
39
审稿时长
19 weeks
期刊介绍: APL Bioengineering is devoted to research at the intersection of biology, physics, and engineering. The journal publishes high-impact manuscripts specific to the understanding and advancement of physics and engineering of biological systems. APL Bioengineering is the new home for the bioengineering and biomedical research communities. APL Bioengineering publishes original research articles, reviews, and perspectives. Topical coverage includes: -Biofabrication and Bioprinting -Biomedical Materials, Sensors, and Imaging -Engineered Living Systems -Cell and Tissue Engineering -Regenerative Medicine -Molecular, Cell, and Tissue Biomechanics -Systems Biology and Computational Biology
期刊最新文献
Substrate stiffness modulates collective colony expansion of the social bacterium Myxococcus xanthus. Stem cell mechanoadaptation. I. Effect of microtubule stabilization and volume changing stresses on cytoskeletal remodeling. Stem cell mechanoadaptation. II. Microtubule stabilization and substrate compliance effects on cytoskeletal remodeling. Unpleasant odors compared to pleasant ones cause higher cortical activations detectable by fNIRS and observable mostly in females. Organs-on-chips: Advanced engineered living systems.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1