使用BioNLP和张量或矩阵分解的药物知识发现综述。

Genomics & informatics Pub Date : 2019-06-01 Epub Date: 2019-06-27 DOI:10.5808/GI.2019.17.2.e18
Mina Gachloo, Yuxing Wang, Jingbo Xia
{"title":"使用BioNLP和张量或矩阵分解的药物知识发现综述。","authors":"Mina Gachloo,&nbsp;Yuxing Wang,&nbsp;Jingbo Xia","doi":"10.5808/GI.2019.17.2.e18","DOIUrl":null,"url":null,"abstract":"<p><p>Prediction of the relations among drug and other molecular or social entities is the main knowledge discovery pattern for the purpose of drug-related knowledge discovery. Computational approaches have combined the information from different sources and levels for drug-related knowledge discovery, which provides a sophisticated comprehension of the relationship among drugs, targets, diseases, and targeted genes, at the molecular level, or relationships among drugs, usage, side effect, safety, and user preference, at a social level. In this research, previous work from the BioNLP community and matrix or matrix decomposition was reviewed, compared, and concluded, and eventually, the BioNLP open-shared task was introduced as a promising case study representing this area.</p>","PeriodicalId":94288,"journal":{"name":"Genomics & informatics","volume":"17 2","pages":"e18"},"PeriodicalIF":0.0000,"publicationDate":"2019-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6808632/pdf/","citationCount":"11","resultStr":"{\"title\":\"A review of drug knowledge discovery using BioNLP and tensor or matrix decomposition.\",\"authors\":\"Mina Gachloo,&nbsp;Yuxing Wang,&nbsp;Jingbo Xia\",\"doi\":\"10.5808/GI.2019.17.2.e18\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>Prediction of the relations among drug and other molecular or social entities is the main knowledge discovery pattern for the purpose of drug-related knowledge discovery. Computational approaches have combined the information from different sources and levels for drug-related knowledge discovery, which provides a sophisticated comprehension of the relationship among drugs, targets, diseases, and targeted genes, at the molecular level, or relationships among drugs, usage, side effect, safety, and user preference, at a social level. In this research, previous work from the BioNLP community and matrix or matrix decomposition was reviewed, compared, and concluded, and eventually, the BioNLP open-shared task was introduced as a promising case study representing this area.</p>\",\"PeriodicalId\":94288,\"journal\":{\"name\":\"Genomics & informatics\",\"volume\":\"17 2\",\"pages\":\"e18\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2019-06-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6808632/pdf/\",\"citationCount\":\"11\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Genomics & informatics\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.5808/GI.2019.17.2.e18\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2019/6/27 0:00:00\",\"PubModel\":\"Epub\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Genomics & informatics","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.5808/GI.2019.17.2.e18","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2019/6/27 0:00:00","PubModel":"Epub","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 11

摘要

预测药物与其他分子或社会实体之间的关系是毒品相关知识发现的主要知识发现模式。计算方法结合了来自不同来源和水平的信息,用于药物相关知识的发现,这在分子水平上提供了对药物、靶标、疾病和靶向基因之间关系的复杂理解,或在社会水平上提供对药物、用法、副作用、安全性和用户偏好之间关系的精细理解。在这项研究中,对BioNLP社区和矩阵或矩阵分解的先前工作进行了回顾、比较和总结,最终,BioNLP开放共享任务被引入,作为代表该领域的一个有前景的案例研究。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

摘要图片

查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
A review of drug knowledge discovery using BioNLP and tensor or matrix decomposition.

Prediction of the relations among drug and other molecular or social entities is the main knowledge discovery pattern for the purpose of drug-related knowledge discovery. Computational approaches have combined the information from different sources and levels for drug-related knowledge discovery, which provides a sophisticated comprehension of the relationship among drugs, targets, diseases, and targeted genes, at the molecular level, or relationships among drugs, usage, side effect, safety, and user preference, at a social level. In this research, previous work from the BioNLP community and matrix or matrix decomposition was reviewed, compared, and concluded, and eventually, the BioNLP open-shared task was introduced as a promising case study representing this area.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
自引率
0.00%
发文量
0
期刊最新文献
Analyzing COVID-19 progression with Markov multistage models: insights from a Korean cohort. Structural insights into antibody-based immunotherapy for hepatocellular carcinoma. DeepDoublet identifies neighboring cell-dependent gene expression. Rore: robust and efficient antioxidant protein classification via a novel dimensionality reduction strategy based on learning of fewer features. Rare disease genomics and precision medicine.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1