甜菜碱,一种有效对抗双氯芬酸对蛋白质结构和稳定性的有害影响的有机渗透物

IF 4.033 Q4 Biochemistry, Genetics and Molecular Biology Biophysics Pub Date : 2023-10-10 DOI:10.1134/S000635092303003X
Mohd. Basheeruddin, Neesar Ahmed, Md Khurshid Alam Khan, Shazia Jamal
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引用次数: 0

摘要

了解药物-蛋白质相互作用的物理化学对于制定靶向药物合成指南至关重要。本研究通过热稳定性、圆二色性、固有荧光和对接研究,考察了非甾体抗炎药双氯芬酸钠(DCF)对作为模型蛋白的牛胰腺核糖核酸酶-A(RNase-A)稳定性和结构的影响。由于药物-蛋白质相互作用是药物的一个重要药代动力学参数,因此研究DCF对蛋白质结构和稳定性的影响具有重要意义。当评估热力学参数时,观察到DCF在Tm和\(\Delta G_{{\text{D}})方面使RNase-A不稳定,而添加渗透液稳定了蛋白质。在DCF和渗透液存在的情况下,观察到蛋白质的三级结构发生变化,但二级结构没有变化。荧光研究显示荧光强度降低,证实了DCF和渗透液对RNase-a荧光的猝灭。分子对接研究揭示了氢键和范德华参与RNase-A-DCF相互作用。这种酶RNAse-A的活性在DCF存在下降低,而渗透液通过增加kcat和降低Km值来帮助恢复活性。本研究将为DCF与渗透液的组合治疗提供平台,以抵消DCF的有害影响。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

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Betaine, an Organic Osmolyte Effectively Counteracts the Deleterious Effect of Diclofenac on Protein Structure and Stability

Understanding physical chemistry underlying drug-protein interaction is essential to devise guidelines for the synthesis of target-oriented drugs. In the present study, the effects of the non-steroidal anti-inflammatory drug (NSAID), diclofenac sodium (DCF) on the stability and structure of Bovine Pancreatic Ribonuclease-A (RNase-A) taken as model protein has been examined by thermal stability, circular dichroism, intrinsic fluorescence, and docking studies. Since drug-protein interaction is an important pharmacokinetic parameter of a drug, it was deemed significant to study the effects of DCF on protein structure and stability. When the thermodynamic parameters were assessed, DCF was observed to destabilized RNase-A in terms of Tm and \(\Delta G_{{\text{D}}}^{^\circ }\) while the addition of osmolytes stabilized the protein. In the presence of DCF and osmolyte, a change in the tertiary structure but not in the secondary structure of the protein was observed. The fluorescence study showed a decrease in the fluorescence intensity confirming the quenching of RNase-A fluorescence by DCF and osmolytes. Molecular docking studies revealed the involvement of hydrogen bonds and Van der Waals in RNase-A-DCF interaction. The activity of this enzyme RNAse-A is decreased in presence of DCF while osmolyte helps bring back the activity by increasing kcat and decreasing Km values. This study will provide the platform for the use of combinatorial therapy of DCF with osmolytes to offsets the harmful effects of DCF.

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来源期刊
Biophysics
Biophysics Biochemistry, Genetics and Molecular Biology-Biophysics
CiteScore
1.20
自引率
0.00%
发文量
67
期刊介绍: Biophysics is a multidisciplinary international peer reviewed journal that covers a wide scope of problems related to the main physical mechanisms of processes taking place at different organization levels in biosystems. It includes structure and dynamics of macromolecules, cells and tissues; the influence of environment; energy transformation and transfer; thermodynamics; biological motility; population dynamics and cell differentiation modeling; biomechanics and tissue rheology; nonlinear phenomena, mathematical and cybernetics modeling of complex systems; and computational biology. The journal publishes short communications devoted and review articles.
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