Andhika P. Prasetyo, Joanna M. Murray, Muh. Firdaus A. K. Kurniawan, Naiara G. Sales, Allan D. McDevitt, Stefano Mariani
{"title":"鲨鱼粉尘:加工残留物高通量DNA测序在受威胁鲨鱼和鳐鱼贸易监测中的应用","authors":"Andhika P. Prasetyo, Joanna M. Murray, Muh. Firdaus A. K. Kurniawan, Naiara G. Sales, Allan D. McDevitt, Stefano Mariani","doi":"10.1111/conl.12971","DOIUrl":null,"url":null,"abstract":"<p>Illegal fishing, unregulated bycatch, and market demand for certain products (e.g., fins) are largely responsible for the rapid global decline of shark and ray populations. Controlling trade of endangered species remains difficult due to product variety, taxonomic ambiguity, and trade complexity. The genetic tools traditionally used to identify traded species typically target individual tissue samples, and are time-consuming and/or species-specific. Here, we performed high-throughput sequencing of trace DNA fragments retrieved from dust and scraps left behind by trade activities. We metabarcoded “shark-dust” samples from seven processing plants in the world's biggest shark landing site (Java, Indonesia), and identified 61 shark and ray taxa (representing half of all chondrichthyan orders), more than half of which could not be recovered from tissue samples collected in parallel from the same sites. Importantly, over 80% of shark-dust sequences were found to belong to CITES-listed species. We argue that this approach is likely to become a powerful and cost-effective monitoring tool wherever wildlife is traded.</p>","PeriodicalId":157,"journal":{"name":"Conservation Letters","volume":null,"pages":null},"PeriodicalIF":7.7000,"publicationDate":"2023-07-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/conl.12971","citationCount":"0","resultStr":"{\"title\":\"Shark-dust: Application of high-throughput DNA sequencing of processing residues for trade monitoring of threatened sharks and rays\",\"authors\":\"Andhika P. Prasetyo, Joanna M. Murray, Muh. Firdaus A. K. Kurniawan, Naiara G. Sales, Allan D. McDevitt, Stefano Mariani\",\"doi\":\"10.1111/conl.12971\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p>Illegal fishing, unregulated bycatch, and market demand for certain products (e.g., fins) are largely responsible for the rapid global decline of shark and ray populations. Controlling trade of endangered species remains difficult due to product variety, taxonomic ambiguity, and trade complexity. The genetic tools traditionally used to identify traded species typically target individual tissue samples, and are time-consuming and/or species-specific. Here, we performed high-throughput sequencing of trace DNA fragments retrieved from dust and scraps left behind by trade activities. We metabarcoded “shark-dust” samples from seven processing plants in the world's biggest shark landing site (Java, Indonesia), and identified 61 shark and ray taxa (representing half of all chondrichthyan orders), more than half of which could not be recovered from tissue samples collected in parallel from the same sites. Importantly, over 80% of shark-dust sequences were found to belong to CITES-listed species. We argue that this approach is likely to become a powerful and cost-effective monitoring tool wherever wildlife is traded.</p>\",\"PeriodicalId\":157,\"journal\":{\"name\":\"Conservation Letters\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":7.7000,\"publicationDate\":\"2023-07-19\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://onlinelibrary.wiley.com/doi/epdf/10.1111/conl.12971\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Conservation Letters\",\"FirstCategoryId\":\"93\",\"ListUrlMain\":\"https://onlinelibrary.wiley.com/doi/10.1111/conl.12971\",\"RegionNum\":1,\"RegionCategory\":\"环境科学与生态学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"BIODIVERSITY CONSERVATION\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Conservation Letters","FirstCategoryId":"93","ListUrlMain":"https://onlinelibrary.wiley.com/doi/10.1111/conl.12971","RegionNum":1,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"BIODIVERSITY CONSERVATION","Score":null,"Total":0}
Shark-dust: Application of high-throughput DNA sequencing of processing residues for trade monitoring of threatened sharks and rays
Illegal fishing, unregulated bycatch, and market demand for certain products (e.g., fins) are largely responsible for the rapid global decline of shark and ray populations. Controlling trade of endangered species remains difficult due to product variety, taxonomic ambiguity, and trade complexity. The genetic tools traditionally used to identify traded species typically target individual tissue samples, and are time-consuming and/or species-specific. Here, we performed high-throughput sequencing of trace DNA fragments retrieved from dust and scraps left behind by trade activities. We metabarcoded “shark-dust” samples from seven processing plants in the world's biggest shark landing site (Java, Indonesia), and identified 61 shark and ray taxa (representing half of all chondrichthyan orders), more than half of which could not be recovered from tissue samples collected in parallel from the same sites. Importantly, over 80% of shark-dust sequences were found to belong to CITES-listed species. We argue that this approach is likely to become a powerful and cost-effective monitoring tool wherever wildlife is traded.
期刊介绍:
Conservation Letters is a reputable scientific journal that is devoted to the publication of both empirical and theoretical research that has important implications for the conservation of biological diversity. The journal warmly invites submissions from various disciplines within the biological and social sciences, with a particular interest in interdisciplinary work. The primary aim is to advance both pragmatic conservation objectives and scientific knowledge. Manuscripts are subject to a rapid communication schedule, therefore they should address current and relevant topics. Research articles should effectively communicate the significance of their findings in relation to conservation policy and practice.