有限角度漫射光学断层成像中病灶的多任务深度学习重建与定位

IF 8.9 1区 医学 Q1 COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS IEEE Transactions on Medical Imaging Pub Date : 2020-10-31 DOI:10.36227/techrxiv.13150805
Hanene Ben Yedder, Ben Cardoen, G. Hamarneh
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引用次数: 9

摘要

漫射光学断层扫描(DOT)利用近红外光在组织中的传播来评估其光学特性并识别异常。DOT图像重建是一个不适定问题,因为介质中的光子高度散射,并且与未知数量相比,测量数量较少。有限角度DOT以增加重建复杂性为代价降低了探针复杂性。因此,重建通常会受到伪影的破坏,因此,很难获得目标对象(例如恶性病变)的准确重建。重建并不总是确保小病变的良好定位。此外,传统的基于优化的重建方法计算成本高昂,对于实时成像应用来说速度太慢。我们的目标是开发一种使用深度学习的快速准确的图像重建方法,其中多任务学习除了可以改进重建外,还可以确保准确的病变定位。与单任务优化方法相比,我们在一种新的多任务学习公式中应用了空间注意力和基于距离变换的损失函数,以改进定位和重建。鉴于训练监督深度学习模型所需的真实世界传感器图像对的稀缺性,我们利用基于物理的模拟来生成合成数据集,并使用迁移学习模块来调整计算机和真实世界数据之间的传感器域分布,同时利用跨域学习。应用我们的方法,我们发现我们可以忠实地重建和定位病变,同时允许实时重建。我们还证明了本算法可以重建多个癌症病变。结果表明,多任务学习提供了更清晰、更准确的重建。
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Multitask Deep Learning Reconstruction and Localization of Lesions in Limited Angle Diffuse Optical Tomography
Diffuse optical tomography (DOT) leverages near-infrared light propagation through tissue to assess its optical properties and identify abnormalities. DOT image reconstruction is an ill-posed problem due to the highly scattered photons in the medium and the smaller number of measurements compared to the number of unknowns. Limited-angle DOT reduces probe complexity at the cost of increased reconstruction complexity. Reconstructions are thus commonly marred by artifacts and, as a result, it is difficult to obtain an accurate reconstruction of target objects, e.g., malignant lesions. Reconstruction does not always ensure good localization of small lesions. Furthermore, conventional optimization-based reconstruction methods are computationally expensive, rendering them too slow for real-time imaging applications. Our goal is to develop a fast and accurate image reconstruction method using deep learning, where multitask learning ensures accurate lesion localization in addition to improved reconstruction. We apply spatial-wise attention and a distance transform based loss function in a novel multitask learning formulation to improve localization and reconstruction compared to single-task optimized methods. Given the scarcity of real-world sensor-image pairs required for training supervised deep learning models, we leverage physics-based simulation to generate synthetic datasets and use a transfer learning module to align the sensor domain distribution between in silico and real-world data, while taking advantage of cross-domain learning. Applying our method, we find that we can reconstruct and localize lesions faithfully while allowing real-time reconstruction. We also demonstrate that the present algorithm can reconstruct multiple cancer lesions. The results demonstrate that multitask learning provides sharper and more accurate reconstruction.
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来源期刊
IEEE Transactions on Medical Imaging
IEEE Transactions on Medical Imaging 医学-成像科学与照相技术
CiteScore
21.80
自引率
5.70%
发文量
637
审稿时长
5.6 months
期刊介绍: The IEEE Transactions on Medical Imaging (T-MI) is a journal that welcomes the submission of manuscripts focusing on various aspects of medical imaging. The journal encourages the exploration of body structure, morphology, and function through different imaging techniques, including ultrasound, X-rays, magnetic resonance, radionuclides, microwaves, and optical methods. It also promotes contributions related to cell and molecular imaging, as well as all forms of microscopy. T-MI publishes original research papers that cover a wide range of topics, including but not limited to novel acquisition techniques, medical image processing and analysis, visualization and performance, pattern recognition, machine learning, and other related methods. The journal particularly encourages highly technical studies that offer new perspectives. By emphasizing the unification of medicine, biology, and imaging, T-MI seeks to bridge the gap between instrumentation, hardware, software, mathematics, physics, biology, and medicine by introducing new analysis methods. While the journal welcomes strong application papers that describe novel methods, it directs papers that focus solely on important applications using medically adopted or well-established methods without significant innovation in methodology to other journals. T-MI is indexed in Pubmed® and Medline®, which are products of the United States National Library of Medicine.
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