具有多个多糖降解基因的模式菌株——微球藻KCTC12973T的第一个完整基因组序列。

IF 1.5 4区 生物学 Q4 GENETICS & HEREDITY Marine genomics Pub Date : 2022-04-01 Epub Date: 2022-01-21 DOI:10.1016/j.margen.2022.100931
Jiangqi Wang , Linxi Jin , Jianxin Wang , Zhuhua Chan , Runying Zeng , Jie Wu , Wu Qu
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引用次数: 0

摘要

微球菌属(Microbulbifer)在海洋环境元素循环过程中起着重要作用,2007年分离鉴定了M. celer的第一个类型菌株KCTC 12973T (= is - 39t = CCUG 54356T)。然而,M. celer KCTC 12973T的基因组序列尚不清楚,这给该属其他物种的功能探索和新种鉴定带来了困难。本研究报道了M. celer KCTC 12973T的全基因组序列,基因组大小为4,346,001 bp。基因组中共注释了3601个蛋白质编码基因。在蛋白质编码基因中发现了参与多糖降解的潜在基因,包括纤维素、几丁质、木聚糖和果胶酸。此外,硝酸盐和亚硝酸盐还原酶基因也在基因组中被注释。这些结果表明M. celer KCTC 12973T对海洋生态系统碳氮循环具有潜在的关键生态功能。
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The first complete genome sequence of Microbulbifer celer KCTC12973T, a type strain with multiple polysaccharide degradation genes

Genus Microbulbifer plays important roles in element cycling process in marine environments, and the first type strain KCTC 12973T (=ISL-39T = CCUG 54356T) of M. celer was isolated and identified in 2007. However, the genome sequence of M. celer KCTC 12973T is still unclear, which complicates the functional exploration and new species identification of other species belonged to this genus. This study reported the complete genome sequence of M. celer KCTC 12973T with a genome size of 4,346,001 bp. A total of 3601 protein-coding genes were annotated in the genome. The potential genes involved in the polysaccharide degradation, including cellulose, chitin, xylan, and pectate, were found in the protein-coding genes. Besides, the reductase genes of nitrate and nitrite were also annotated in the genome. These findings indicated the potential crucial ecological functions of M. celer KCTC 12973T for carbon and nitrogen cycles in marine ecosystems.

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来源期刊
Marine genomics
Marine genomics 生物-遗传学
CiteScore
3.60
自引率
5.30%
发文量
50
审稿时长
29 days
期刊介绍: The journal publishes papers on all functional and evolutionary aspects of genes, chromatin, chromosomes and (meta)genomes of marine (and freshwater) organisms. It deals with new genome-enabled insights into the broader framework of environmental science. Topics within the scope of this journal include: • Population genomics and ecology • Evolutionary and developmental genomics • Comparative genomics • Metagenomics • Environmental genomics • Systems biology More specific topics include: geographic and phylogenomic characterization of aquatic organisms, metabolic capacities and pathways of organisms and communities, biogeochemical cycles, genomics and integrative approaches applied to microbial ecology including (meta)transcriptomics and (meta)proteomics, tracking of infectious diseases, environmental stress, global climate change and ecosystem modelling.
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