地理上分离的北缘樟科樟科植物的全质体基因组序列特征

IF 0.8 Q4 PLANT SCIENCES KOREAN JOURNAL OF PLANT TAXONOMY Pub Date : 2022-06-30 DOI:10.11110/kjpt.2022.52.2.114
Amarsanaa Gantsetseg, Jung-Hyun Kim, C. Hyun, Eun-Kyeong Han, Jung-Hyun Lee
{"title":"地理上分离的北缘樟科樟科植物的全质体基因组序列特征","authors":"Amarsanaa Gantsetseg, Jung-Hyun Kim, C. Hyun, Eun-Kyeong Han, Jung-Hyun Lee","doi":"10.11110/kjpt.2022.52.2.114","DOIUrl":null,"url":null,"abstract":"Lindera angustifolia is mainly distributed in the temperate climate zone of China but shows an extraordinary distribution, disjunctively isolated on the western coastal islands of Korea. We therefore present the complete chloroplast genome of Korean L. angustifolia. The complete plastome was 152,836 bp in length, with an overall GC content of 39.2%. A large single copy (93,726 bp) and a small single copy (18,946 bp) of the genome were separated by a pair of inverted repeats (20,082 bp). The genome consists of 125 genes, including 81 protein-coding, eight ribosomal RNA, and 36 transfer RNA genes. While five RNA editing genes (psbL, rpl2, ndhB×2, and ndhD) were identified in L. angustifolia from China, the \"ndhD\" gene was not recognized as an RNA editing site in the corresponding Korean individual. A phylogenetic analysis revealed that Korean L. angustifolia is most closely related to the Chinese L. angustifolia with strong bootstrap support, forming a sister group of L. glauca.","PeriodicalId":52232,"journal":{"name":"KOREAN JOURNAL OF PLANT TAXONOMY","volume":" ","pages":""},"PeriodicalIF":0.8000,"publicationDate":"2022-06-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Characteristics of the complete plastid genome sequence of Lindera angustifolia (Lauraceae) in the geographically separated northern edge\",\"authors\":\"Amarsanaa Gantsetseg, Jung-Hyun Kim, C. Hyun, Eun-Kyeong Han, Jung-Hyun Lee\",\"doi\":\"10.11110/kjpt.2022.52.2.114\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Lindera angustifolia is mainly distributed in the temperate climate zone of China but shows an extraordinary distribution, disjunctively isolated on the western coastal islands of Korea. We therefore present the complete chloroplast genome of Korean L. angustifolia. The complete plastome was 152,836 bp in length, with an overall GC content of 39.2%. A large single copy (93,726 bp) and a small single copy (18,946 bp) of the genome were separated by a pair of inverted repeats (20,082 bp). The genome consists of 125 genes, including 81 protein-coding, eight ribosomal RNA, and 36 transfer RNA genes. While five RNA editing genes (psbL, rpl2, ndhB×2, and ndhD) were identified in L. angustifolia from China, the \\\"ndhD\\\" gene was not recognized as an RNA editing site in the corresponding Korean individual. A phylogenetic analysis revealed that Korean L. angustifolia is most closely related to the Chinese L. angustifolia with strong bootstrap support, forming a sister group of L. glauca.\",\"PeriodicalId\":52232,\"journal\":{\"name\":\"KOREAN JOURNAL OF PLANT TAXONOMY\",\"volume\":\" \",\"pages\":\"\"},\"PeriodicalIF\":0.8000,\"publicationDate\":\"2022-06-30\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"KOREAN JOURNAL OF PLANT TAXONOMY\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.11110/kjpt.2022.52.2.114\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q4\",\"JCRName\":\"PLANT SCIENCES\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"KOREAN JOURNAL OF PLANT TAXONOMY","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.11110/kjpt.2022.52.2.114","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"PLANT SCIENCES","Score":null,"Total":0}
引用次数: 0

摘要

狭叶Lindera angustifolia主要分布在中国的温带气候区,但在朝鲜西部沿海岛屿上却表现出异常的分布,呈间断性孤立。因此,我们提出了韩国狭叶L.angustifolia的完整叶绿体基因组。完整的质体长度为152836bp,GC总含量为39.2%。基因组的一个大拷贝(93726bp)和一个小拷贝(18946bp)由一对反向重复序列(20082bp)分离。基因组由125个基因组成,包括81个蛋白质编码基因、8个核糖体RNA基因和36个转移RNA基因。虽然在来自中国的狭叶L.angustifolia中鉴定出五个RNA编辑基因(psbL、rpl2、ndhB×2和ndhD),但在相应的韩国个体中,“ndhD”基因未被识别为RNA编辑位点。系统发育分析表明,韩国的狭叶L.angustifolia与中国的狭叶L.亲缘关系最为密切,具有较强的bootstrap支持,形成了L.glauca的姐妹群。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
Characteristics of the complete plastid genome sequence of Lindera angustifolia (Lauraceae) in the geographically separated northern edge
Lindera angustifolia is mainly distributed in the temperate climate zone of China but shows an extraordinary distribution, disjunctively isolated on the western coastal islands of Korea. We therefore present the complete chloroplast genome of Korean L. angustifolia. The complete plastome was 152,836 bp in length, with an overall GC content of 39.2%. A large single copy (93,726 bp) and a small single copy (18,946 bp) of the genome were separated by a pair of inverted repeats (20,082 bp). The genome consists of 125 genes, including 81 protein-coding, eight ribosomal RNA, and 36 transfer RNA genes. While five RNA editing genes (psbL, rpl2, ndhB×2, and ndhD) were identified in L. angustifolia from China, the "ndhD" gene was not recognized as an RNA editing site in the corresponding Korean individual. A phylogenetic analysis revealed that Korean L. angustifolia is most closely related to the Chinese L. angustifolia with strong bootstrap support, forming a sister group of L. glauca.
求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
KOREAN JOURNAL OF PLANT TAXONOMY
KOREAN JOURNAL OF PLANT TAXONOMY Agricultural and Biological Sciences-Plant Science
CiteScore
1.50
自引率
40.00%
发文量
23
期刊最新文献
The complete chloroplast genome sequence of <i>Rhododendron caucasicum</i> (Ericaceae) Current status of whole-genome sequences of Korean angiosperms Comparative morphological analysis reveals a new record of <i>Boehmeria nakashimae</i> (Urticaceae) in Korea <i>Ipomoea heptaphylla</i> and <i>Murdannia nudiflora</i>: New records for the flora of Korea The complete chloroplast genome of <i>Scrophularia kakudensis</i> and a comparative analysis of <i>S. kakudensis</i> and <i>S. cephalantha</i>
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1