生物手性和化学计量网络分析:弗兰克模型的变化

J. A. Ágreda Bastidas, Juan Andrés Montoya Arguello, Carolina Mejía
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引用次数: 1

摘要

生物同手性是用化学反应机制建模的,包括自催化和抑制反应以及输入和输出流。从数学的角度来看,与这些机制相关的微分方程必须表现出双稳定性。这些分支的搜索可以使用化学计量网络分析进行。该算法简化了数学分析,并可在计算机程序中实现,有助于我们分析化学网络。然而,尽管该算法可以简化为线性多项式,但在某些情况下,所涉及的多项式的复杂性和长度使得分析不可行。这个问题通过扩展化学计量矩阵得到了部分解决,这些矩阵的行编码了作为输入的网络中发生的不同反应之间的对偶关系。所有这些事实使我们能够分析28种不同的网络模型,强调化学机制产生自发镜像对称性破缺所需的基本要求。
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Biological homochirality and stoichiometric network analysis: Variations on Frank’s model
Biological homochirality is modelled using chemical reaction mechanisms that include autocatalytic and inhibition reactions as well as input and output flows. From the mathematical point of view, the differential equations associated with those mechanisms have to exhibit bistability.  The search for those bifurcations can be carried out using stoichiometric network analysis. This algorithm simplifies the mathematical analysis and can be implemented in a computer programme, which can help us to analyse chemical networks. However, regardless of the reduction to linear polynomials, which is made possible by this algorithm, in some cases, the complexity and length of the polynomials involved make the analysis unfeasible. This problem has been partially solved by extending the stoichiometric matrix with rows that code the duality relations between the different reactions occurring in the network given as input. All these facts allow us to analyse 28 different network models, highlighting the basic requirements needed by a chemical mechanism to have spontaneous mirror symmetry breaking.
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