韩国蚕桑(樟科)叶绿体全基因组序列

IF 0.8 Q4 PLANT SCIENCES KOREAN JOURNAL OF PLANT TAXONOMY Pub Date : 2021-09-30 DOI:10.11110/kjpt.2021.51.3.332
Yoon-Jung Park, Kyeong-Sik Cheon
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引用次数: 1

摘要

采用Illumina测序法测定了蚕桑新石藻叶绿体(cp)全基因组序列。完整的cp基因组长度为152446bp,包含一个93796bp的大单拷贝区和一个18506bp的小单拷贝区,由一对20072bp的反向重复序列分离。共注释了112个独特基因,包括78个蛋白质编码基因(PCG)、30个转移RNA和4个核糖体RNA。在PCG中,有18个基因含有一个或两个内含子。两个蚕桑cp基因组之间的序列变异水平很低,有7个插入或缺失,只有一个单核苷酸多态性。最大似然法分析表明,蚕桑与毛果放线菌亲缘关系密切。
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The complete chloroplast genome sequence of Korean Neolitsea sericea (Lauraceae)
The complete chloroplast (cp) genome sequence of Neolitsea sericea was determined by Illumina sequencing. The complete cp genome was 152,446bp in length, containing a large single-copy region of 93,796 bp and a small single-copy region of 18,506bp, which were separated by a pair of 20,072bp inverted repeats. A total of 112 unique genes were annotated, including 78 protein-coding genes (PCGs), 30 transfer RNAs, and four ribosomal RNAs. Among the PCGs, 18 genes contained one or two introns. A very low level of sequence variation between two cp genomes of N. sericea was found with seven insertions or deletions and only one single nucleotide polymorphism. An analysis using the maximum likelihood method showed that N. sericea was closely related to Actinodaphne trichocarpa.
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来源期刊
KOREAN JOURNAL OF PLANT TAXONOMY
KOREAN JOURNAL OF PLANT TAXONOMY Agricultural and Biological Sciences-Plant Science
CiteScore
1.50
自引率
40.00%
发文量
23
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