Nadia Al-Sabouni, Isabel S. Fenton, R. Telford, M. Kučera
{"title":"现代浮游有孔虫物种识别的可重复性及其对群落结构分析的意义","authors":"Nadia Al-Sabouni, Isabel S. Fenton, R. Telford, M. Kučera","doi":"10.5194/JM-37-519-2018","DOIUrl":null,"url":null,"abstract":"Abstract. Applications of planktonic foraminifera in Quaternary palaeoceanographic and\npalaeobiological studies require consistency in species identification. Yet\nthe degree of taxonomic consistency among the practitioners and the effects\nof any potential deviations on community structure metrics have never been\nquantitatively assessed. Here we present the results of an experiment in\ntaxonomic consistency involving 21 researchers representing a range of\nexperience and taxonomic schools from around the world. Participants were\nasked to identify the same two sets of 300 specimens from a modern\nsubtropical North Atlantic sample, one sieved at >125 µm\nand one at > 150 µm. The identification was carried out\neither on actual specimens (slide test) or their digital images\n(digital test). The specimens were fixed so the identifications could be\ndirectly compared. In all tests, only between one-quarter and one-eighth of\nthe specimens achieved absolute agreement. Therefore, the identifications\nacross the participants were used to determine a consensus ID for each\nspecimen. Since no strict consensus (>50 % agreement) could be\nachieved for 20–30 % of the specimens, we used a “soft consensus” based\non the most common identification. The average percentage agreement relative\nto the consensus of the slide test was 77 % in the >150 µm\nand 69 % in the >125 µm test. These values\nwere 7 % lower for the digital analyses. We find that taxonomic\nconsistency is enhanced when researchers have been trained within a taxonomic\nschool and when they regularly perform community analyses. There is an almost\nnegligible effect of taxonomic inconsistency on sea surface temperature\nestimates based on transfer function conversion of the census counts,\nindicating the temperature signal in foraminiferal assemblages is correctly\nrepresented even if only two-thirds of the assemblage is consistently\nidentified. The same does not apply to measures of diversity and community\nstructure within the assemblage, and here we advise caution in using compound\ndatasets for such studies. The decrease in the level of consistency when\nspecimens are identified from digital images is significant and\nspecies-specific, with implications for the development of training sets for\nautomated identification systems.\n","PeriodicalId":54786,"journal":{"name":"Journal of Micropalaeontology","volume":" ","pages":""},"PeriodicalIF":4.1000,"publicationDate":"2018-12-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"15","resultStr":"{\"title\":\"Reproducibility of species recognition in modern planktonic foraminifera and its implications for analyses of community structure\",\"authors\":\"Nadia Al-Sabouni, Isabel S. Fenton, R. Telford, M. Kučera\",\"doi\":\"10.5194/JM-37-519-2018\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Abstract. Applications of planktonic foraminifera in Quaternary palaeoceanographic and\\npalaeobiological studies require consistency in species identification. Yet\\nthe degree of taxonomic consistency among the practitioners and the effects\\nof any potential deviations on community structure metrics have never been\\nquantitatively assessed. Here we present the results of an experiment in\\ntaxonomic consistency involving 21 researchers representing a range of\\nexperience and taxonomic schools from around the world. Participants were\\nasked to identify the same two sets of 300 specimens from a modern\\nsubtropical North Atlantic sample, one sieved at >125 µm\\nand one at > 150 µm. The identification was carried out\\neither on actual specimens (slide test) or their digital images\\n(digital test). The specimens were fixed so the identifications could be\\ndirectly compared. In all tests, only between one-quarter and one-eighth of\\nthe specimens achieved absolute agreement. Therefore, the identifications\\nacross the participants were used to determine a consensus ID for each\\nspecimen. Since no strict consensus (>50 % agreement) could be\\nachieved for 20–30 % of the specimens, we used a “soft consensus” based\\non the most common identification. The average percentage agreement relative\\nto the consensus of the slide test was 77 % in the >150 µm\\nand 69 % in the >125 µm test. These values\\nwere 7 % lower for the digital analyses. We find that taxonomic\\nconsistency is enhanced when researchers have been trained within a taxonomic\\nschool and when they regularly perform community analyses. There is an almost\\nnegligible effect of taxonomic inconsistency on sea surface temperature\\nestimates based on transfer function conversion of the census counts,\\nindicating the temperature signal in foraminiferal assemblages is correctly\\nrepresented even if only two-thirds of the assemblage is consistently\\nidentified. The same does not apply to measures of diversity and community\\nstructure within the assemblage, and here we advise caution in using compound\\ndatasets for such studies. The decrease in the level of consistency when\\nspecimens are identified from digital images is significant and\\nspecies-specific, with implications for the development of training sets for\\nautomated identification systems.\\n\",\"PeriodicalId\":54786,\"journal\":{\"name\":\"Journal of Micropalaeontology\",\"volume\":\" \",\"pages\":\"\"},\"PeriodicalIF\":4.1000,\"publicationDate\":\"2018-12-04\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"15\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of Micropalaeontology\",\"FirstCategoryId\":\"89\",\"ListUrlMain\":\"https://doi.org/10.5194/JM-37-519-2018\",\"RegionNum\":3,\"RegionCategory\":\"地球科学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"PALEONTOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Micropalaeontology","FirstCategoryId":"89","ListUrlMain":"https://doi.org/10.5194/JM-37-519-2018","RegionNum":3,"RegionCategory":"地球科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"PALEONTOLOGY","Score":null,"Total":0}
Reproducibility of species recognition in modern planktonic foraminifera and its implications for analyses of community structure
Abstract. Applications of planktonic foraminifera in Quaternary palaeoceanographic and
palaeobiological studies require consistency in species identification. Yet
the degree of taxonomic consistency among the practitioners and the effects
of any potential deviations on community structure metrics have never been
quantitatively assessed. Here we present the results of an experiment in
taxonomic consistency involving 21 researchers representing a range of
experience and taxonomic schools from around the world. Participants were
asked to identify the same two sets of 300 specimens from a modern
subtropical North Atlantic sample, one sieved at >125 µm
and one at > 150 µm. The identification was carried out
either on actual specimens (slide test) or their digital images
(digital test). The specimens were fixed so the identifications could be
directly compared. In all tests, only between one-quarter and one-eighth of
the specimens achieved absolute agreement. Therefore, the identifications
across the participants were used to determine a consensus ID for each
specimen. Since no strict consensus (>50 % agreement) could be
achieved for 20–30 % of the specimens, we used a “soft consensus” based
on the most common identification. The average percentage agreement relative
to the consensus of the slide test was 77 % in the >150 µm
and 69 % in the >125 µm test. These values
were 7 % lower for the digital analyses. We find that taxonomic
consistency is enhanced when researchers have been trained within a taxonomic
school and when they regularly perform community analyses. There is an almost
negligible effect of taxonomic inconsistency on sea surface temperature
estimates based on transfer function conversion of the census counts,
indicating the temperature signal in foraminiferal assemblages is correctly
represented even if only two-thirds of the assemblage is consistently
identified. The same does not apply to measures of diversity and community
structure within the assemblage, and here we advise caution in using compound
datasets for such studies. The decrease in the level of consistency when
specimens are identified from digital images is significant and
species-specific, with implications for the development of training sets for
automated identification systems.
期刊介绍:
The Journal of Micropalaeontology (JM) is an established international journal covering all aspects of microfossils and their application to both applied studies and basic research. In particular we welcome submissions relating to microfossils and their application to palaeoceanography, palaeoclimatology, palaeobiology, evolution, taxonomy, environmental change and molecular phylogeny.