COVID-19大流行中公平数据点部署的概念验证和前景

IF 1.3 3区 计算机科学 Q3 COMPUTER SCIENCE, INFORMATION SYSTEMS Data Intelligence Pub Date : 2022-08-18 DOI:10.1162/dint_a_00179
Mariam Basajja, M. Suchánek, Getu Tadele Taye, S. Amare, Mutwalibi Nambobi, Sakinat Folorunso, Ruduan Plug, Francisca Onaolapo Oladipo, M. van Reisen
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引用次数: 2

摘要

摘要快速有效的数据共享对于控制疾病爆发是必要的,例如当前的冠状病毒大流行。尽管存在数据共享协议,但数据孤岛、缺乏可互操作的数据基础设施以及不同的机构管辖权阻碍了数据共享和可访问性。为了克服这些挑战,病毒爆发数据网络(VODAN)-非洲倡议正在倡导一种方法,即数据永远不会离开生成数据的机构,而是算法可以自动访问数据并查询多个数据集。为了实现这一点,FAIR数据点——分布式数据存储库,托管符合FAIR指南的机器可操作数据和元数据(这些数据应该是可查找、可访问、可互操作和可重复使用的)——已经在参与机构中部署,使用了一个名为“盒子中的VODAN”(ViB)的工具包。ViB是一套支持FAIR的开源服务,目标单一:支持以机器可操作的方式收集世界卫生组织(世界卫生组织)电子病例报告表(eCRF)作为FAIR数据,但不将数据暴露或转移到设施外。在执行概念验证后,ViB部署在乌干达和莱顿大学。概念验证生成了第一个查询,该查询在两大洲实现。对体系结构进行了SWOT(优势、劣势、机会和威胁)分析,并确定了解决方案未来开发所需的规范和要求的变更。
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Proof of Concept and Horizons on Deployment of FAIR Data Points in the COVID-19 Pandemic
Abstract Rapid and effective data sharing is necessary to control disease outbreaks, such as the current coronavirus pandemic. Despite the existence of data sharing agreements, data silos, lack of interoperable data infrastructures, and different institutional jurisdictions hinder data sharing and accessibility. To overcome these challenges, the Virus Outbreak Data Network (VODAN)-Africa initiative is championing an approach in which data never leaves the institution where it was generated, but, instead, algorithms can visit the data and query multiple datasets in an automated way. To make this possible, FAIR Data Points—distributed data repositories that host machine-actionable data and metadata that adhere to the FAIR Guidelines (that data should be Findable, Accessible, Interoperable and Reusable)—have been deployed in participating institutions using a dockerised bundle of tools called VODAN in a Box (ViB). ViB is a set of multiple FAIR-enabling and open-source services with a single goal: to support the gathering of World Health Organization (WHO) electronic case report forms (eCRFs) as FAIR data in a machine-actionable way, but without exposing or transferring the data outside the facility. Following the execution of a proof of concept, ViB was deployed in Uganda and Leiden University. The proof of concept generated a first query which was implemented across two continents. A SWOT (strengths, weaknesses, opportunities and threats) analysis of the architecture was carried out and established the changes needed for specifications and requirements for the future development of the solution.
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来源期刊
Data Intelligence
Data Intelligence COMPUTER SCIENCE, INFORMATION SYSTEMS-
CiteScore
6.50
自引率
15.40%
发文量
40
审稿时长
8 weeks
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