墨西哥淡水蟹Tzotzilthelphusa villarosalensis Villalobos & Álvarez线粒体全基因组,2013(腕足目:十足目:假thelphusidae: Raddausinae)

IF 1.2 4区 生物学 Q3 MARINE & FRESHWATER BIOLOGY Journal of Crustacean Biology Pub Date : 2023-06-01 DOI:10.1093/jcbiol/ruad033
Eric G Moreno-Juárez, A. Jiménez-Marín, Sandra I. Vera-Paz, F. Álvarez
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引用次数: 0

摘要

我们展示了墨西哥淡水蟹Tzotzilthelphusa villarosalensisVillalobos & Álvarez, 2013的完整线粒体基因组。这是首次报道的假thelphusoidea超家族的线粒体基因组。我们从基因组略读中进行了从头组装。T. villarosalensis线粒体基因组长度为17,203 bp,其基因拓扑结构与其他淡水和海洋科相似,例如细胞色素氧化酶复合物亚基和ATA合成酶的位置,甚至nad3, nad5, nad4, nad4L, nad6和cytb的顺序。相比之下,16S、12S和nad1等基因的顺序和组织则因与之比较的系统发育类群而异。系统发育分析将T. villarosalensis作为迄今为止报道的所有淡水蟹的姐妹类群,并作为异水蟹子的一部分。这一完整的线粒体基因组可为进一步研究拟绒蟹科和其他原生淡水蟹提供参考。
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The complete mitochondrial genome of the freshwater crab Tzotzilthelphusa villarosalensis Villalobos & Álvarez, 2013 (Brachyura: Decapoda: Pseudothelphusidae: Raddausinae) from Mexico
We present the complete mitochondrial genome of Tzotzilthelphusa villarosalensisVillalobos & Álvarez, 2013, a freshwater crab from Mexico. This is the first mitochondrial genome reported for the superfamily Pseudothelphusoidea. We performed a de novo assembly from genome skimming reads. The mitochondrial genome of T. villarosalensis has a length of 17,203 bp and its gene topology is similar to other freshwater and marine families, e.g., the position of the cytochrome oxidase complex subunits and ATA synthetase, even the order of nad3, nad5, nad4, nad4L, nad6, and cytb. By contrast, the order and organization of genes like the 16S, 12S, and nad1 are different depending on the phylogenetic group with which they are compared. The phylogenetic analyses placed T. villarosalensis as a sister group of all freshwater crabs reported until now and as part of the subsection Heterotremata. This complete mitochondrial genome could be a reference for further genomic studies of the family Pseudothelphusidae and other primary freshwater crabs.
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来源期刊
Journal of Crustacean Biology
Journal of Crustacean Biology 生物-海洋与淡水生物学
CiteScore
2.10
自引率
9.10%
发文量
66
审稿时长
6-12 weeks
期刊介绍: The Journal of Crustacean Biology is the official journal of The Crustacean Society, publishing peer-reviewed research on all aspects of crustacean biology and other marine arthropods. Papers are published in English only, but abstracts or summaries in French, German, Portuguese, or Spanish may be added when appropriate.
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