亚胺酸变异构反应中的取代基效应R−C(OH)=NH→R−C(O) nh2:星际介质中肽键形成的动力学意义

IF 1.5 4区 化学 Q4 CHEMISTRY, PHYSICAL International Journal of Chemical Kinetics Pub Date : 2023-04-21 DOI:10.1002/kin.21642
Judith Würmel, John M. Simmie
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引用次数: 4

摘要

许多酰胺,RC(O)NH2,已经在恒星之间的空间中被光谱检测到。自然,研究这些元素是如何形成的是化学进化过程中的一个重要问题,从C、H、N、O、P等元素到生命,因为所谓的肽键- C(O) - NH -是多氨基酸或蛋白质的关键链接。氰化物和水在星际介质(ISM)中都很丰富,有研究认为它们在酸h30 +的催化下与水-冰粒反应,首先生成亚胺酸R−C≡N + H2O→RC(OH)NH,然后生成酰胺。本文研究了亚胺酸在R = H、HO、NC、H2N、HC(O)、H3C、HOCH2、H2CCH、H3C(O)、H2NCH2、C2H5和CN的分子内互变异构反应的气相动力学,特别是在量子力学小曲率和量子化反应态隧穿作用占主导地位的低温下。最具活性的亚胺酸是H2NC(OH)NH,它可以形成尿素,尿素是星际介质(ISM)中已知的三种酰胺之一,它可以自反应形成RNA中的胞嘧啶和尿嘧啶两种典型核碱基。热化学(,,,{H T−H 0} $\ rbrace H_T-H_0\rbrace$)也报道了亚胺酸和酰胺的反应,以及硫和磷类似物HC(SH)NH和HC(OH)PH的互变异构反应。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

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Substituent effects in the tautomerization of imidic acids R−C(OH)=NH → R−C(O)NH2: Kinetic implications for the formation of peptide bonds in the interstellar medium

A number of amides, RC(O)NH2, have been detected spectroscopically in the space between the stars. Naturally the study of how these are formed is an important question on the path of chemical evolution from the elements C, H, N, O, P, … to life because the so-called peptide-bond −C(O)−NH− is a key linkage in poly-amino acids or proteins. Both cyanides and water are abundant in the interstellar medium (ISM) and it has been suggested [J Phys Chem A. 2021;126:924-939] that these react on water–ice grains, catalyzed by acid H3O+, to form firstly imidic acids R−C≡ N + H2O → RC(OH)NH and subsequently to amides. Here we explore the kinetics in the gas-phase of the intramolecular tautomerization reaction of the imidic acids for R = H, HO, NC, H2N, HC(O), H3C, HOCH2, H2CCH,H3C(O), H2NCH2, C2H5, and CN, particularly at low temperatures where quantum mechanical small curvature and quantized reactant states tunneling are dominant. The most reactive imidic acid is H2NC(OH)NH which goes on to form urea, one of three known amides in the interstellar medium (ISM), which can self-react to form cytosine and uracil two canonical nucleobases in RNA. The thermochemistry (, , , { H T H 0 } $\lbrace H_T-H_0\rbrace$ ) of the imidic acids and amides is also reported as well as the tautomerization of sulfur and phosphorus analogs HC(SH)NH and HC(OH)PH.

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来源期刊
CiteScore
3.30
自引率
6.70%
发文量
74
审稿时长
3 months
期刊介绍: As the leading archival journal devoted exclusively to chemical kinetics, the International Journal of Chemical Kinetics publishes original research in gas phase, condensed phase, and polymer reaction kinetics, as well as biochemical and surface kinetics. The Journal seeks to be the primary archive for careful experimental measurements of reaction kinetics, in both simple and complex systems. The Journal also presents new developments in applied theoretical kinetics and publishes large kinetic models, and the algorithms and estimates used in these models. These include methods for handling the large reaction networks important in biochemistry, catalysis, and free radical chemistry. In addition, the Journal explores such topics as the quantitative relationships between molecular structure and chemical reactivity, organic/inorganic chemistry and reaction mechanisms, and the reactive chemistry at interfaces.
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