{"title":"亚胺酸变异构反应中的取代基效应R−C(OH)=NH→R−C(O) nh2:星际介质中肽键形成的动力学意义","authors":"Judith Würmel, John M. Simmie","doi":"10.1002/kin.21642","DOIUrl":null,"url":null,"abstract":"<p>A number of amides, RC(O)NH<sub>2</sub>, have been detected spectroscopically in the space between the stars. Naturally the study of how these are formed is an important question on the path of chemical evolution from the elements C, H, N, O, P, … to life because the so-called peptide-bond −C(O)−NH− is a key linkage in poly-amino acids or proteins. Both cyanides and water are abundant in the interstellar medium (ISM) and it has been suggested [<i>J Phys Chem A</i>. 2021;<b>126</b>:924-939] that these react on water–ice grains, catalyzed by acid H<sub>3</sub>O<sup>+</sup>, to form firstly imidic acids R−C≡ N + H<sub>2</sub>O → RC(OH)NH and subsequently to amides. Here we explore the kinetics in the gas-phase of the intramolecular tautomerization reaction of the imidic acids for R = H, HO, NC, H<sub>2</sub>N, HC(O), H<sub>3</sub>C, HOCH<sub>2</sub>, H<sub>2</sub>CCH,H<sub>3</sub>C(O), H<sub>2</sub>NCH<sub>2</sub>, C<sub>2</sub>H<sub>5</sub>, and CN, particularly at low temperatures where quantum mechanical small curvature and quantized reactant states tunneling are dominant. The most reactive imidic acid is H<sub>2</sub>NC(OH)NH which goes on to form urea, one of three known amides in the interstellar medium (ISM), which can self-react to form cytosine and uracil two canonical nucleobases in RNA. The thermochemistry (<math></math>, <math></math>, <math></math>, <math>\n <semantics>\n <mrow>\n <mo>{</mo>\n <msub>\n <mi>H</mi>\n <mi>T</mi>\n </msub>\n <mo>−</mo>\n <msub>\n <mi>H</mi>\n <mn>0</mn>\n </msub>\n <mo>}</mo>\n </mrow>\n <annotation>$\\lbrace H_T-H_0\\rbrace$</annotation>\n </semantics></math>) of the imidic acids and amides is also reported as well as the tautomerization of sulfur and phosphorus analogs HC(SH)NH and HC(OH)PH.</p>","PeriodicalId":13894,"journal":{"name":"International Journal of Chemical Kinetics","volume":"55 7","pages":"381-391"},"PeriodicalIF":1.5000,"publicationDate":"2023-04-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/kin.21642","citationCount":"4","resultStr":"{\"title\":\"Substituent effects in the tautomerization of imidic acids R−C(OH)=NH → R−C(O)NH2: Kinetic implications for the formation of peptide bonds in the interstellar medium\",\"authors\":\"Judith Würmel, John M. Simmie\",\"doi\":\"10.1002/kin.21642\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p>A number of amides, RC(O)NH<sub>2</sub>, have been detected spectroscopically in the space between the stars. Naturally the study of how these are formed is an important question on the path of chemical evolution from the elements C, H, N, O, P, … to life because the so-called peptide-bond −C(O)−NH− is a key linkage in poly-amino acids or proteins. Both cyanides and water are abundant in the interstellar medium (ISM) and it has been suggested [<i>J Phys Chem A</i>. 2021;<b>126</b>:924-939] that these react on water–ice grains, catalyzed by acid H<sub>3</sub>O<sup>+</sup>, to form firstly imidic acids R−C≡ N + H<sub>2</sub>O → RC(OH)NH and subsequently to amides. Here we explore the kinetics in the gas-phase of the intramolecular tautomerization reaction of the imidic acids for R = H, HO, NC, H<sub>2</sub>N, HC(O), H<sub>3</sub>C, HOCH<sub>2</sub>, H<sub>2</sub>CCH,H<sub>3</sub>C(O), H<sub>2</sub>NCH<sub>2</sub>, C<sub>2</sub>H<sub>5</sub>, and CN, particularly at low temperatures where quantum mechanical small curvature and quantized reactant states tunneling are dominant. The most reactive imidic acid is H<sub>2</sub>NC(OH)NH which goes on to form urea, one of three known amides in the interstellar medium (ISM), which can self-react to form cytosine and uracil two canonical nucleobases in RNA. The thermochemistry (<math></math>, <math></math>, <math></math>, <math>\\n <semantics>\\n <mrow>\\n <mo>{</mo>\\n <msub>\\n <mi>H</mi>\\n <mi>T</mi>\\n </msub>\\n <mo>−</mo>\\n <msub>\\n <mi>H</mi>\\n <mn>0</mn>\\n </msub>\\n <mo>}</mo>\\n </mrow>\\n <annotation>$\\\\lbrace H_T-H_0\\\\rbrace$</annotation>\\n </semantics></math>) of the imidic acids and amides is also reported as well as the tautomerization of sulfur and phosphorus analogs HC(SH)NH and HC(OH)PH.</p>\",\"PeriodicalId\":13894,\"journal\":{\"name\":\"International Journal of Chemical Kinetics\",\"volume\":\"55 7\",\"pages\":\"381-391\"},\"PeriodicalIF\":1.5000,\"publicationDate\":\"2023-04-21\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://onlinelibrary.wiley.com/doi/epdf/10.1002/kin.21642\",\"citationCount\":\"4\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"International Journal of Chemical Kinetics\",\"FirstCategoryId\":\"92\",\"ListUrlMain\":\"https://onlinelibrary.wiley.com/doi/10.1002/kin.21642\",\"RegionNum\":4,\"RegionCategory\":\"化学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q4\",\"JCRName\":\"CHEMISTRY, PHYSICAL\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"International Journal of Chemical Kinetics","FirstCategoryId":"92","ListUrlMain":"https://onlinelibrary.wiley.com/doi/10.1002/kin.21642","RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"CHEMISTRY, PHYSICAL","Score":null,"Total":0}
Substituent effects in the tautomerization of imidic acids R−C(OH)=NH → R−C(O)NH2: Kinetic implications for the formation of peptide bonds in the interstellar medium
A number of amides, RC(O)NH2, have been detected spectroscopically in the space between the stars. Naturally the study of how these are formed is an important question on the path of chemical evolution from the elements C, H, N, O, P, … to life because the so-called peptide-bond −C(O)−NH− is a key linkage in poly-amino acids or proteins. Both cyanides and water are abundant in the interstellar medium (ISM) and it has been suggested [J Phys Chem A. 2021;126:924-939] that these react on water–ice grains, catalyzed by acid H3O+, to form firstly imidic acids R−C≡ N + H2O → RC(OH)NH and subsequently to amides. Here we explore the kinetics in the gas-phase of the intramolecular tautomerization reaction of the imidic acids for R = H, HO, NC, H2N, HC(O), H3C, HOCH2, H2CCH,H3C(O), H2NCH2, C2H5, and CN, particularly at low temperatures where quantum mechanical small curvature and quantized reactant states tunneling are dominant. The most reactive imidic acid is H2NC(OH)NH which goes on to form urea, one of three known amides in the interstellar medium (ISM), which can self-react to form cytosine and uracil two canonical nucleobases in RNA. The thermochemistry (, , , ) of the imidic acids and amides is also reported as well as the tautomerization of sulfur and phosphorus analogs HC(SH)NH and HC(OH)PH.
期刊介绍:
As the leading archival journal devoted exclusively to chemical kinetics, the International Journal of Chemical Kinetics publishes original research in gas phase, condensed phase, and polymer reaction kinetics, as well as biochemical and surface kinetics. The Journal seeks to be the primary archive for careful experimental measurements of reaction kinetics, in both simple and complex systems. The Journal also presents new developments in applied theoretical kinetics and publishes large kinetic models, and the algorithms and estimates used in these models. These include methods for handling the large reaction networks important in biochemistry, catalysis, and free radical chemistry. In addition, the Journal explores such topics as the quantitative relationships between molecular structure and chemical reactivity, organic/inorganic chemistry and reaction mechanisms, and the reactive chemistry at interfaces.