用反应规范模型对地中海水牛体重进行环境相互作用基因分型

IF 0.2 4区 农林科学 Q4 AGRICULTURE, DAIRY & ANIMAL SCIENCE Revista Colombiana De Ciencias Pecuarias Pub Date : 2021-05-11 DOI:10.17533/UDEA.RCCP.V34N2A05
Fernando Barreto Rodrigues, C. H. Malhado, P. L. Carneiro, Diego Pagung Ambrosini, M. P. Rezende, R. Bozzi, Jiuzhou Z. Song
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引用次数: 0

摘要

背景:近年来,巴西水牛养殖量显著增加。然而,很少进行基因评估。目的:通过随机回归,使用反应常模模型,评估巴西地中海水牛205日龄体重的基因型x环境相互作用。方法:收集1990年至2014年间出生的水牛的数据,这些数据来自巴西水牛改良计划的五个农场,分别位于巴西北部(1)、东北部(1),南部(2)和东南部地区(1)。初始数据库包括205天龄(W205)时的5280个观察结果。我们使用两个层次反应范数模型评估拟合:两步(HRNM2s)和一步(HRNM1s)。模型拟合使用偏差信息准则、基于贝叶斯因子的偏差和基于条件预测序数的偏差进行估计。创建环境描述符是为了根据年份、季节、群体和性别将个体分组到常见的生产环境中。结果:一步分级反应范数模型(HRNM1s)得到了最佳拟合。随着环境梯度的增加,该模型的直接遗传力估计值在0.17-0.67之间,母体遗传力在0.02-0.11之间。与低管理和高管理环境中的HRNM1相比,父系分类之间的相关性较低,证实了基因型x环境相互作用的存在。结论:我们建议在水牛中更广泛地应用遗传评估,以确定特定环境中的最佳基因型。
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Genotype by environment interactions for body weight in Mediterranean buffaloes using reaction norm models
Background: Buffalo breeding has significantly increased in Brazil over recent years. However, few genetic evaluations have been conducted. Objective: To assess Genotype x Environment Interactions in the Mediterranean Water Buffalo in Brazil, for weight at 205 days of age, using reaction norm models via random regression. Methods: Data for buffaloes born between 1990 and 2014 were collected from five farms ascribed to the Brazilian Buffaloe Improvement Program, located in the North (1), Northeast (1), South (2) and Southeast (1) regions of Brazil. The initial database consisted of 5,280 observations at 205 days of age (W205). We assessed fit using two hierarchical reaction norm models: a two-step (HRNM2s) and a one-step (HRNM1s). Model fit was estimated using the Deviance Information Criterion, Deviance Based on Bayes Factors and Deviance based on Conditional Predictive Ordinate. The environmental descriptors were created to group individuals into common production environments based on year, season, herd and sex. Results: The best fit was obtained for the hierarchical reaction norm model with one-step (HRNM1s). Direct heritability estimates for this model ranged from 0.17 to 0.67 and the maternal heritability from 0.02 to 0.11 with increasing environmental gradient. Lower correlations among the sire classifications were obtained in comparison with HRNM1s in environments with low and high management, confirming the presence of genotype x environment interactions. Conclusion: We recommend a wider application of genetic evaluation in buffalo aimed at identifying optimal genotypes within specific environments.
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来源期刊
Revista Colombiana De Ciencias Pecuarias
Revista Colombiana De Ciencias Pecuarias AGRICULTURE, DAIRY & ANIMAL SCIENCE-
CiteScore
0.80
自引率
0.00%
发文量
18
审稿时长
6-12 weeks
期刊介绍: The editors of Revista Colombiana de Ciencias Pecuarias (RCCP) welcome the submission of original manuscripts on experimental and clinical studies associated with the broad areas of animal sciences and veterinary medicine as they interface with biochemistry, molecular biology, physiology, pharmacology, toxicology, pathology, microbiology, parasitology, immunology and epidemiology. The scope of the journal includes studies of basic and applied research in animal management and production, feeding and nutrition, reproduction, breeding, genetics, animal welfare and behavior; as well as animal production focussed from biotechnology, soil science, agrostology, silvopastoral systems, livestock economics and the environment. The criteria for acceptance of papers submitted for publication are originality, quality and clarity of the content. Each contribution must be based on original, unpublished research that has not been simultaneously submitted to other journals. All papers will be peer reviewed. All authors bear responsibility for ensuring the integrity and quality of their reported research. It is the author''s responsibility to secure permission to use figures or tables that have been published elsewhere. Contributions may be classified as original research, review, rapid communication, clinical case studies or methodological articles, as well as news/commentaries or letters to the editor. Most review articles are invited by the editor. Authors interested in submitting a review article should contact the corresponding editor. Rapid publication of original manuscripts is a goal of the journal. Manuscripts must be written in English. Each manuscript is considered for publication with the understanding that it has not been simultaneously submitted to any other journal. Upon acceptance for publication, papers are subject to editorial review and revision.
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