用于新冠肺炎治疗的天然分子的DFT和分子对接研究

IF 2.4 Q3 CHEMISTRY, MULTIDISCIPLINARY Moroccan Journal of Chemistry Pub Date : 2021-03-04 DOI:10.48317/IMIST.PRSM/MORJCHEM-V9I2.21931
H. E. Hadki
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引用次数: 0

摘要

摘要由严重呼吸综合征冠状病毒引起的2019冠状病毒病(新冠肺炎)的出现和传播被认为是威胁全球卫生系统的突发公共卫生事件,截至2020年6月,它在215个国家累计造成9033423例确诊病例和469539多人死亡,人与人之间的传播已被确定为传播途径。到目前为止,缺乏治疗或预防新冠肺炎的有效疫苗使情况进一步恶化。在这种情况下,本研究旨在通过计算建模方法评估天然成分是否具有抗病毒作用。利用密度泛函理论(DFT)估算了各种配体的动力学参数、前沿分子轨道、分子静电势以及化学反应描述符。结果表明,Crocin和Digitoxigenin表现出对电子电荷转移具有最低电阻的潜在申请人,化学硬度分别为2.19eV和2.96eV,HOMO-LUMO差异最小。除了DFT计算外,还对严重急性呼吸系统综合征冠状病毒2型碱性蛋白酶(PDB:6LU7)进行了对接模拟研究,以确定配体的结合亲和力。研究结果表明,与羟氯喹和氯喹相比,Crocin的结合能最低,为-8.1Kcal/mol,可能是CoV-2-ARS的良好抑制剂,羟氯喹的结合亲和力分别为-5.4和-4.9kcal/mol。L3的高结合亲和力归因于存在将配体连接到受体的关键氨基酸残基的14个氢键。
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DFT and Molecular docking study of natural molecules proposed for COVID-19 treatment
Abstract Emergence and spread of corona virus disease 2019 (COVID-19), caused by severe respiratory syndrome coronavirus, is considered a public health emergency threatening global health systems, as of June, 2020, It caused a cumulative total of 9,033,423 confirmed cases and more than 469,539 deaths across 215 countries, person to-person transmission has being identified as the route for spreading. So far, the lack of effective vaccines for the treatment or prevention of Covid-19 has further worsened the situation. In this context, the present study aims to assess whether naturally occurring components have an antiviral effect via a computational modeling approach. Density Functional theory (DFT) was performed to estimate the kinetic parameters, frontier molecular orbitals, molecular electrostatic potential as well as chemical reactivity descriptors of various ligands. The results revealed that Crocin and Digitoxigenin exhibited a potential applicant with the lowest resistance to electronic charge transfer with a chemical hardness of 2.19eV and 2.96eV respectively, as well as the lowest HOMO-LUMO difference. In addition to the DFT calculation, a docking simulation study was conducted on the SARS-CoV-2 base protease (PDB: 6LU7) to determine the binding affinity of ligands. The findings show that Crocin exhibits the lowest binding energy of -8.1 Kcal/mol and may be a good inhibitor of CoV-2-SARS compared to hydroxychloroquine and chloroquine, which have a binding affinity of -5.4 and -4.9 Kcal/mol, respectively. The high binding affinity of L3 was assigned to the existence of 14 hydrogen bonds connecting the ligand to the critical amino acid residues of the receptor.
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来源期刊
Moroccan Journal of Chemistry
Moroccan Journal of Chemistry CHEMISTRY, MULTIDISCIPLINARY-
CiteScore
3.40
自引率
9.10%
发文量
0
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