利用序列相关扩增多态性(srap)技术鉴定印尼西苏门答腊kerinci - west sumatra地区的斑点松(merkusii)

IF 1.6 Q3 PLANT SCIENCES Sabrao Journal of Breeding and Genetics Pub Date : 2023-06-30 DOI:10.54910/sabrao2023.55.3.26
Azs Rinaldi, Nurainas, Syamsuardi
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引用次数: 0

摘要

松是一种潜在的木材,自然生长在印度尼西亚的中苏门答腊(Kerinci)和北苏门答腊(Aceh和Tapanuli)。Kerinci地方种与其他两个苏门答腊地方种(即Aceh和Tapanuli)具有不同的形态,但其位置处于相同的分类水平。因此,需要评价更多的性状,以确定其属于Kerinci的地方种。这项研究的目的是利用SRAP识别Kerinci和Aceh (Rao和TAHURA [Taman Hutan Raya])地方品种之间的遗传特征差异,以便长期使用和未来保护。从3个merkusii种群的24棵树的叶子中提取DNA,即在Kerinci的一个自然种群和在印度尼西亚Rao和TAHURA发现的两个栽培种群。使用7个SRAP组合引物,分析发现等位基因(带)种类繁多。总的来说,扩增产生了62个条带,平均每个主对有9个条带。但绝大多数条带为多态性(91.79%),单态条带仅为0.57%。柯林契地方品种的波段变化最大,有45%的信息波段。引物C (Me1 + Em3)在900 bp和引物I (Me3 + Em1)在1050 bp的组合显示了作为分子特征的特定波段。在Kerinci发现的P. merkusii地方种与在印度尼西亚Rao和TAHURA发现的其他种群有一个关键的分子特征。研究结果表明,不同种群间存在着优越的遗传变异。
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IDENTIFICATION OF PINUS MERKUSII LANDRACE BELONGING TO KERINCI - WEST SUMATRA, INDONESIA, USING SEQUENCE-RELATED AMPLIFIED POLYMORPHISM (SRAP) TECHNIQUE
Pinus merkusii is a potential wood that naturally grows in Central Sumatra (Kerinci) and North Sumatra (Aceh and Tapanuli), Indonesia. The Kerinci landrace has a different morphology from the other two Sumatran Pinus landraces, namely, Aceh and Tapanuli, but its placement is at the same taxonomic level. Hence, additional characters need evaluation to validate taxa on P. merkusii landrace belonging to Kerinci. This study aims to identify differences in genetic characters between Kerinci and Aceh (Rao and TAHURA [Taman Hutan Raya]) landraces using SRAP for long-term use and future conservation. DNA extraction ran from the leaves of 24 individual trees belonging to three populations of P. merkusii, i.e., one naturally occurring population in Kerinci and the two cultivated populaces found in Rao and TAHURA, Indonesia. Using seven SRAP combination primers, the analysis revealed an immense variety of alleles (bands). Overall, the amplification produced 62 bands, with nine, on average, per primary pair. However, most bands were polymorphic (91.79%), and only 0.57% were monomorphic. With 45% informative bands, the Kerinci landrace has the highest band variation. A combination of primer C (Me1 + Em3) at 900 bp and primer I (Me3 + Em1) at 1050 bp band size indicated specific bands that served as molecular characteristics. A crucial molecular characteristic distinguishes the landraces of P. merkusii found in Kerinci and other populations in Rao and TAHURA, Indonesia. The study revealed superior genetic variation among the P. merkusii populations evaluated.
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来源期刊
Sabrao Journal of Breeding and Genetics
Sabrao Journal of Breeding and Genetics 农林科学-奶制品与动物科学
CiteScore
1.90
自引率
50.00%
发文量
63
期刊介绍: The SABRAO Journal of Breeding and Genetics is an international journal of plant breeding and genetics research and was first published in 1969. It is the official publication of the Society for the Advancement of Breeding Research in Asia and Oceania (SABRAO). Its objectives are to: promote the international exchange of research information on plant breeding and genetics, by describing new research findings, or ideas of a basic or practical nature; and be a medium for the exchange of ideas and news regarding members of the Society. The Journal gives priority to articles that are of direct relevance to plant breeders and with emphasis on the Asian region. Invited for publication are research articles, short communications, methods, reviews, commentaries, and opinion articles. Scientific contributions are refereed and edited to international standards. The journal publishes articles for SABRAO members mainly. The Journal preferred strongly that at least one author should be a current member of the Society. Non-members may also publish in the journal.
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