{"title":"利用序列相关扩增多态性(srap)技术鉴定印尼西苏门答腊kerinci - west sumatra地区的斑点松(merkusii)","authors":"Azs Rinaldi, Nurainas, Syamsuardi","doi":"10.54910/sabrao2023.55.3.26","DOIUrl":null,"url":null,"abstract":"Pinus merkusii is a potential wood that naturally grows in Central Sumatra (Kerinci) and North Sumatra (Aceh and Tapanuli), Indonesia. The Kerinci landrace has a different morphology from the other two Sumatran Pinus landraces, namely, Aceh and Tapanuli, but its placement is at the same taxonomic level. Hence, additional characters need evaluation to validate taxa on P. merkusii landrace belonging to Kerinci. This study aims to identify differences in genetic characters between Kerinci and Aceh (Rao and TAHURA [Taman Hutan Raya]) landraces using SRAP for long-term use and future conservation. DNA extraction ran from the leaves of 24 individual trees belonging to three populations of P. merkusii, i.e., one naturally occurring population in Kerinci and the two cultivated populaces found in Rao and TAHURA, Indonesia. Using seven SRAP combination primers, the analysis revealed an immense variety of alleles (bands). Overall, the amplification produced 62 bands, with nine, on average, per primary pair. However, most bands were polymorphic (91.79%), and only 0.57% were monomorphic. With 45% informative bands, the Kerinci landrace has the highest band variation. A combination of primer C (Me1 + Em3) at 900 bp and primer I (Me3 + Em1) at 1050 bp band size indicated specific bands that served as molecular characteristics. A crucial molecular characteristic distinguishes the landraces of P. merkusii found in Kerinci and other populations in Rao and TAHURA, Indonesia. The study revealed superior genetic variation among the P. merkusii populations evaluated.","PeriodicalId":21328,"journal":{"name":"Sabrao Journal of Breeding and Genetics","volume":" ","pages":""},"PeriodicalIF":1.6000,"publicationDate":"2023-06-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"IDENTIFICATION OF PINUS MERKUSII LANDRACE BELONGING TO KERINCI - WEST SUMATRA, INDONESIA, USING SEQUENCE-RELATED AMPLIFIED POLYMORPHISM (SRAP) TECHNIQUE\",\"authors\":\"Azs Rinaldi, Nurainas, Syamsuardi\",\"doi\":\"10.54910/sabrao2023.55.3.26\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Pinus merkusii is a potential wood that naturally grows in Central Sumatra (Kerinci) and North Sumatra (Aceh and Tapanuli), Indonesia. The Kerinci landrace has a different morphology from the other two Sumatran Pinus landraces, namely, Aceh and Tapanuli, but its placement is at the same taxonomic level. Hence, additional characters need evaluation to validate taxa on P. merkusii landrace belonging to Kerinci. This study aims to identify differences in genetic characters between Kerinci and Aceh (Rao and TAHURA [Taman Hutan Raya]) landraces using SRAP for long-term use and future conservation. DNA extraction ran from the leaves of 24 individual trees belonging to three populations of P. merkusii, i.e., one naturally occurring population in Kerinci and the two cultivated populaces found in Rao and TAHURA, Indonesia. Using seven SRAP combination primers, the analysis revealed an immense variety of alleles (bands). Overall, the amplification produced 62 bands, with nine, on average, per primary pair. However, most bands were polymorphic (91.79%), and only 0.57% were monomorphic. With 45% informative bands, the Kerinci landrace has the highest band variation. A combination of primer C (Me1 + Em3) at 900 bp and primer I (Me3 + Em1) at 1050 bp band size indicated specific bands that served as molecular characteristics. A crucial molecular characteristic distinguishes the landraces of P. merkusii found in Kerinci and other populations in Rao and TAHURA, Indonesia. The study revealed superior genetic variation among the P. merkusii populations evaluated.\",\"PeriodicalId\":21328,\"journal\":{\"name\":\"Sabrao Journal of Breeding and Genetics\",\"volume\":\" \",\"pages\":\"\"},\"PeriodicalIF\":1.6000,\"publicationDate\":\"2023-06-30\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Sabrao Journal of Breeding and Genetics\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.54910/sabrao2023.55.3.26\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q3\",\"JCRName\":\"PLANT SCIENCES\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Sabrao Journal of Breeding and Genetics","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.54910/sabrao2023.55.3.26","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"PLANT SCIENCES","Score":null,"Total":0}
IDENTIFICATION OF PINUS MERKUSII LANDRACE BELONGING TO KERINCI - WEST SUMATRA, INDONESIA, USING SEQUENCE-RELATED AMPLIFIED POLYMORPHISM (SRAP) TECHNIQUE
Pinus merkusii is a potential wood that naturally grows in Central Sumatra (Kerinci) and North Sumatra (Aceh and Tapanuli), Indonesia. The Kerinci landrace has a different morphology from the other two Sumatran Pinus landraces, namely, Aceh and Tapanuli, but its placement is at the same taxonomic level. Hence, additional characters need evaluation to validate taxa on P. merkusii landrace belonging to Kerinci. This study aims to identify differences in genetic characters between Kerinci and Aceh (Rao and TAHURA [Taman Hutan Raya]) landraces using SRAP for long-term use and future conservation. DNA extraction ran from the leaves of 24 individual trees belonging to three populations of P. merkusii, i.e., one naturally occurring population in Kerinci and the two cultivated populaces found in Rao and TAHURA, Indonesia. Using seven SRAP combination primers, the analysis revealed an immense variety of alleles (bands). Overall, the amplification produced 62 bands, with nine, on average, per primary pair. However, most bands were polymorphic (91.79%), and only 0.57% were monomorphic. With 45% informative bands, the Kerinci landrace has the highest band variation. A combination of primer C (Me1 + Em3) at 900 bp and primer I (Me3 + Em1) at 1050 bp band size indicated specific bands that served as molecular characteristics. A crucial molecular characteristic distinguishes the landraces of P. merkusii found in Kerinci and other populations in Rao and TAHURA, Indonesia. The study revealed superior genetic variation among the P. merkusii populations evaluated.
期刊介绍:
The SABRAO Journal of Breeding and Genetics is an international journal of plant breeding and genetics research and was first published in 1969. It is the official publication of the Society for the Advancement of Breeding Research in Asia and Oceania (SABRAO).
Its objectives are to: promote the international exchange of research information on plant breeding and genetics, by describing new research findings, or ideas of a basic or practical nature; and be a medium for the exchange of ideas and news regarding members of the Society.
The Journal gives priority to articles that are of direct relevance to plant breeders and with emphasis on the Asian region. Invited for publication are research articles, short communications, methods, reviews, commentaries, and opinion articles. Scientific contributions are refereed and edited to international standards.
The journal publishes articles for SABRAO members mainly. The Journal preferred strongly that at least one author should be a current member of the Society. Non-members may also publish in the journal.