吡喃葡糖苷衍生物作为细菌和真菌生长抑制剂的化学描述符、PASS、分子对接、分子动力学和ADMET预测

IF 1.7 Q3 CHEMISTRY, ORGANIC Organic Communications Pub Date : 2022-06-28 DOI:10.25135/acg.oc.122.2203.2397
S. Kawsar, A. Kumer, Nasrin S Munia, Mohammed A. Hosen, Unesco Chakma, S. Akash
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引用次数: 17

摘要

α-D-吡喃葡糖苷及其衍生物已被认为是对抗多种人类病原体的抗菌剂,这不断扩大了药物化学家对设计新的生物活性分子及其构效关系(SAR)的关注,而计算工具是建立其理论图谱的最清晰和最可靠的途径。首先,物质活性谱(PASS)值的预测已经初步说明了抗真菌、抗菌、抗病毒和抗癌潜力的信息。据观察,PASS预测的病原体在真菌物种中的得分高于细菌。然而,“利平斯基五法则”已经被监测到药物相似性。在确认了它们的生物学意义后,已经完成了针对细菌和真菌的分子对接,并且这些对接的复合物已经针对水系统的分子动力学进行了优化。一项针对九种细菌和真菌病原体的分子对接研究显示,主要是衍生物的结合亲和力和非结合相互作用很有前景(5-8)。使用密度泛函理论(DFT)获得了化学描述符,并预测了它们在生物系统中的化学稳定性和柔软性。分子动力学研究被发现是所有对接配合物中稳定性最好的。最后,计算了ADMET的性质,为水生和非水生物种提供了安全使用和低毒的非致癌事实。最后,得出结论,这些选择的衍生物(5-8)是高度抗真菌潜力的分子,而不是抗菌潜力,后者在D-吡喃葡糖苷序列中的结构侧链有所不同。抗生素、抗癌抗病毒药物。结果表明,与真菌病原体相比,它们对细菌和病毒病原体更有效。附加脂族酰基链的连接增加了Pa 0.614)的抗菌活性Pa 0.534)0.534),而插入
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Chemical descriptors, PASS, molecular docking, molecular dynamics and ADMET predictions of glucopyranoside derivatives as inhibitors to bacteria and fungi growth
: The methyl α-D-glucopyranoside and its derivatives have been estimated as the antimicrobial agents against numerous human pathogens, which is constantly amplifying the attention of medicinal chemists to design new bioactive molecules and their structure-activity relationship (SAR) while the computational tools are the most lucid and trustable avenue to perform their theoretical profile building up. Firstly, the predictionof activity spectra for substances (PASS) value has illustrated initially information about the antifungal, antibacterial, antiviral, and anticancer potential. It was observed that the PASS predicted pathogens supported their score higher in fungal species than bacteria. However, the “Lipinski five rule” has been monitored for drug-likeness properties. After confirming their biological significance, molecular docking has been completed against both the bacteria and fungi and these docked complexes have been optimized for molecular dynamics through the water system. A molecular docking study against nine bacterial and fungal pathogens revealed promising binding affinity and non-bonding interaction mostly for derivatives ( 5-8 ). The chemical descriptors have been obtained using the density functional theory (DFT) and predict their chemical stability and softness in the biological system. The molecular dynamics study was found to be the best stability of all docked complexes. At last, the ADMET properties have been calculated and provide the safe use and non-carcinogenic fact with low toxicity for both aquatic and non-aquatic species. Finally, it is concluded that these selected derivatives ( 5-8 ) are highly antifungal potential molecules than antibacterial potential which has been varied with respect to their structural side chain in the D-glucopyranoside sequence. antibiotic, anticancer antiviral. results reveal that these were more efficient against bacterial and virus pathogens in comparison with fungal pathogens. The attachment of additional aliphatic acyl chainincreased antibacterial activity Pa 0.534) 0.534) of Pa 0.614), whereas the insertion of
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来源期刊
Organic Communications
Organic Communications CHEMISTRY, ORGANIC-
CiteScore
2.80
自引率
11.80%
发文量
21
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