枣属植物化合物的分子对接比较研究。具有多种心脏保护活性的受体

IF 1 Q4 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Biomedical and Biotechnology Research Journal Pub Date : 2023-04-01 DOI:10.4103/bbrj.bbrj_202_22
Deepali Bansode, Naman Jain, Omkar Tambekar, S. Bodhankar
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引用次数: 0

摘要

背景:在本研究中,我们通过分子对接研究,研究了酸枣中各种植物化合物对不同受体的结合亲和力、ADME和毒性分析。枣属植物化合物与参与心脏保护活性的不同受体结合亲和力的测定。AutoDock Vina,PyMol,Discovery Studio,AutoDock工具,ChemDraw,瑞士ADME,PROTOX-II。方法:分子对接。结果:筛选出的108a、7Q29、5JMY、4DLI、2YCW和1CX2等植物化合物与靶蛋白的结合结果表明,从酸枣中筛选出的植物化学物质具有良好的结合亲和力和良好的受体结合模式。然而,在所有植物化合物中,大枣糖苷-B与血管紧张素转换酶(ACE)(结合能-11.2Kcal/mol)、ACE和中性内肽酶抑制剂(结合能-10.9Kcal/mmol)的结合能最低。与标准合成化合物奈比洛尔相比,尼泊尔赖氨酸受体(结合能-10.4 Kcal/mol)、COX-2受体(结合能量-10.9 Kcal/mmol)、具有β-1肾上腺素能受体的Spinosyn(结合能-9.3 Kcal/mo)、3-O-甲基鞣花酸3'-鼠李糖苷对P38促分裂原活化蛋白激酶受体具有优异的结合亲和力(-9.4 Kcal/mmol)。结论:本工作试图通过计算鉴定大枣中与心血管疾病的各种靶点结合的植物化合物。对接得分、对化合物相互作用的分析表明,大多数化合物具有与心血管疾病相关的多个靶点结合的能力。吸收、分布、代谢、排泄和毒性预测表明,芦丁、大枣糖苷-A、B、表儿茶素等多种植物化合物可作为潜在的心血管疾病候选药物。
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A comparative molecular docking study of phytocompounds of Ziziphus jujuba lam. with multiple receptors for the cardioprotective activity
Background: In this study, we have investigated the binding affinity, ADME, and toxicity analysis of various phytocompounds which are present in Ziziphus jujuba on different receptors related to cardioprotective activity by performing molecular docking studies. Determination of binding affinity of phytocompounds of Z. Jujuba with different receptors involved in the cardioprotective activity. AutoDock Vina, PyMol, Discovery Studio, AutoDock tools, ChemDraw, Swiss ADME, PROTOX-II. Methods: Molecular docking. Results: The binding results of the selected plant compounds and target proteins, namely 108a, 7Q29, 5JMY, 4DLI, 2YCW, and 1CX2, showed that the selected phytochemicals from Z. Jujuba had good binding affinity and good receptor binding mode selected target. However, among all plant compounds, Jujuboside-B has the lowest binding energy with angiotensin-converting enzyme (ACE) (binding energy – 11.2 Kcal/mol), ACE and neutral endopeptidase inhibitors (binding energy – 10.9 Kcal/mol). Neprilysin receptor (binding energy – 10.4 Kcal/mol), COX-2 receptor (binding energy – 10.9 Kcal/mol), Spinosyn with β-1 adrenergic receptor (binding energy – 9.3 Kcal/mol), 3-O-methylellagic acid-3'-rhamnoside has superior binding affinity (−9.4 Kcal/mol) to the P38 mitogen-activated protein kinase receptor compared to the standard synthetic compound nebivolol. Conclusions: The present work was an attempt to computationally identify phytocompounds from Z. Jujuba which can bind to the various targets of cardiovascular disease. The docking scores, analysis of the interactions of the compounds suggest that most of the compounds have the ability to bind to multiple targets involved in cardiovascular disease. Absorption, distribution, metabolism, excretion, and toxicity and toxicity prediction showed various phytocompounds such as rutin, jujuboside-A, B, epicatechin could be used as potential candidate against cardiovascular disease.
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来源期刊
Biomedical and Biotechnology Research Journal
Biomedical and Biotechnology Research Journal Biochemistry, Genetics and Molecular Biology-Biotechnology
CiteScore
2.20
自引率
42.90%
发文量
24
审稿时长
11 weeks
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