Pallabini Dash, M. Bala Divya, Lalitha Guruprasad, Kunchur Guruprasad
{"title":"结核分枝杆菌蛋白Rv1555、Rv1554的三维模型及其与西地那非、他他拉非、伐地那非药物的对接分析表明,干扰喹诺结合可能会影响蛋白质的功能","authors":"Pallabini Dash, M. Bala Divya, Lalitha Guruprasad, Kunchur Guruprasad","doi":"10.1186/s12900-018-0085-4","DOIUrl":null,"url":null,"abstract":"<p>Earlier based on bioinformatics analyses, we had predicted the <i>Mycobacterium tuberculosis</i> (<i>M.tb</i>) proteins; Rv1555 and Rv1554, among the potential new tuberculosis drug targets. According to the ‘TB-drugome’ the Rv1555 protein is ‘druggable’ with sildenafil (Viagra), tadalafil (Cialis) and vardenafil (Levitra) drugs. In the present work, we intended to understand via computer modeling studies, how the above drugs are likely to inhibit the <i>M.tb</i> protein’s function.</p><p>The three-dimensional computer models for <i>M.tb</i> proteins; Rv1555 and Rv1554 constructed on the template of equivalent membrane anchor subunits of the homologous <i>E.coli</i> quinol fumarate reductase respiratory protein complex, followed by drug docking analyses, suggested that the binding of above drugs interferes with quinol binding sites. Also, we experimentally observed the in-vitro growth inhibition of <i>E.coli</i> bacteria containing the homologous <i>M.tb</i> protein sequences with sildenafil and tadalafil drugs.</p><p>The predicted binding sites of the drugs is likely to affect the above <i>M.tb</i> proteins function as quinol binding is known to be essential for electron transfer function during anaerobic respiration in the homologous <i>E.coli</i> protein complex. Therefore, sildenafil and related drugs currently used in the treatment of male erectile dysfunction targeting the human phosphodiesterase 5 enzyme may be evaluated for their plausible role as repurposed drugs to treat human tuberculosis.</p>","PeriodicalId":498,"journal":{"name":"BMC Structural Biology","volume":"18 1","pages":""},"PeriodicalIF":2.2220,"publicationDate":"2018-04-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/s12900-018-0085-4","citationCount":"8","resultStr":"{\"title\":\"Three-dimensional models of Mycobacterium tuberculosis proteins Rv1555, Rv1554 and their docking analyses with sildenafil, tadalafil, vardenafil drugs, suggest interference with quinol binding likely to affect protein’s function\",\"authors\":\"Pallabini Dash, M. Bala Divya, Lalitha Guruprasad, Kunchur Guruprasad\",\"doi\":\"10.1186/s12900-018-0085-4\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p>Earlier based on bioinformatics analyses, we had predicted the <i>Mycobacterium tuberculosis</i> (<i>M.tb</i>) proteins; Rv1555 and Rv1554, among the potential new tuberculosis drug targets. According to the ‘TB-drugome’ the Rv1555 protein is ‘druggable’ with sildenafil (Viagra), tadalafil (Cialis) and vardenafil (Levitra) drugs. In the present work, we intended to understand via computer modeling studies, how the above drugs are likely to inhibit the <i>M.tb</i> protein’s function.</p><p>The three-dimensional computer models for <i>M.tb</i> proteins; Rv1555 and Rv1554 constructed on the template of equivalent membrane anchor subunits of the homologous <i>E.coli</i> quinol fumarate reductase respiratory protein complex, followed by drug docking analyses, suggested that the binding of above drugs interferes with quinol binding sites. Also, we experimentally observed the in-vitro growth inhibition of <i>E.coli</i> bacteria containing the homologous <i>M.tb</i> protein sequences with sildenafil and tadalafil drugs.</p><p>The predicted binding sites of the drugs is likely to affect the above <i>M.tb</i> proteins function as quinol binding is known to be essential for electron transfer function during anaerobic respiration in the homologous <i>E.coli</i> protein complex. Therefore, sildenafil and related drugs currently used in the treatment of male erectile dysfunction targeting the human phosphodiesterase 5 enzyme may be evaluated for their plausible role as repurposed drugs to treat human tuberculosis.</p>\",\"PeriodicalId\":498,\"journal\":{\"name\":\"BMC Structural Biology\",\"volume\":\"18 1\",\"pages\":\"\"},\"PeriodicalIF\":2.2220,\"publicationDate\":\"2018-04-18\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://sci-hub-pdf.com/10.1186/s12900-018-0085-4\",\"citationCount\":\"8\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"BMC Structural Biology\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://link.springer.com/article/10.1186/s12900-018-0085-4\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q3\",\"JCRName\":\"Biochemistry, Genetics and Molecular Biology\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"BMC Structural Biology","FirstCategoryId":"1085","ListUrlMain":"https://link.springer.com/article/10.1186/s12900-018-0085-4","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"Biochemistry, Genetics and Molecular Biology","Score":null,"Total":0}
Three-dimensional models of Mycobacterium tuberculosis proteins Rv1555, Rv1554 and their docking analyses with sildenafil, tadalafil, vardenafil drugs, suggest interference with quinol binding likely to affect protein’s function
Earlier based on bioinformatics analyses, we had predicted the Mycobacterium tuberculosis (M.tb) proteins; Rv1555 and Rv1554, among the potential new tuberculosis drug targets. According to the ‘TB-drugome’ the Rv1555 protein is ‘druggable’ with sildenafil (Viagra), tadalafil (Cialis) and vardenafil (Levitra) drugs. In the present work, we intended to understand via computer modeling studies, how the above drugs are likely to inhibit the M.tb protein’s function.
The three-dimensional computer models for M.tb proteins; Rv1555 and Rv1554 constructed on the template of equivalent membrane anchor subunits of the homologous E.coli quinol fumarate reductase respiratory protein complex, followed by drug docking analyses, suggested that the binding of above drugs interferes with quinol binding sites. Also, we experimentally observed the in-vitro growth inhibition of E.coli bacteria containing the homologous M.tb protein sequences with sildenafil and tadalafil drugs.
The predicted binding sites of the drugs is likely to affect the above M.tb proteins function as quinol binding is known to be essential for electron transfer function during anaerobic respiration in the homologous E.coli protein complex. Therefore, sildenafil and related drugs currently used in the treatment of male erectile dysfunction targeting the human phosphodiesterase 5 enzyme may be evaluated for their plausible role as repurposed drugs to treat human tuberculosis.
期刊介绍:
BMC Structural Biology is an open access, peer-reviewed journal that considers articles on investigations into the structure of biological macromolecules, including solving structures, structural and functional analyses, and computational modeling.