VisAC:一个可视化分析个人祖先血缘关系的交互式工具

IF 1.8 4区 计算机科学 Q3 COMPUTER SCIENCE, SOFTWARE ENGINEERING Information Visualization Pub Date : 2022-05-21 DOI:10.1177/14738716221096383
J. Borges
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引用次数: 1

摘要

家谱研究越来越受欢迎,研究人员越来越多地使用可视化方法来总结和交流他们的发现。家谱是家庭成员及其关系的视觉表示,通常用于支持对家庭历史的研究并公布结果。在某些情况下,祖先可能出现在个人血统中的多个地方,这是发生血亲婚姻的原因之一,即血亲配偶之间的婚姻。目前的家谱可视化方法并不是为了分析和评估个体祖先的血缘水平而设计的。本文提出了VisAC,这是一个交互式工具,用于支持对个人祖先血缘关系的视觉分析。近亲繁殖系数被用来衡量血缘关系。该系数对应于对DNA中两个等位基因(给定基因的变体)从同一个体遗传的概率的估计。在系谱学家的支持下,开发了可视化设计和交互式工具。此外,通过对两个演示视频的问卷调查和对三个目标用户的测试收集的反馈有力地支持了家谱视觉表示的有效性和交互式工具对探索性分析任务的充分性。给出了真实世界的例子来说明可视化设计的有用性,并给出了一个探索性分析的例子来解释交互式工具的使用。总之,这项工作制定了祖先树中血缘关系的可视化分析任务,并提出了一种新的可视化工具VisAC来支持这项任务。
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VisAC: An interactive tool for visual analysis of consanguinity in the ancestry of individuals
Genealogy studies are growing in popularity, and researchers are increasingly using visualization methods to summarize and communicate their findings. A family tree is a visual representation of family members and their relationships that is commonly used to support the research of a family’s history and publish the results. In some cases, an ancestor may occur in more than one place in the lineage of an individual, which is one of the reasons for the occurrence of consanguineous marriages, that is, marriages between blood relative spouses. Current methods for family tree visualization were not designed to analyze and assess the level of consanguinity in the ancestry of individuals. This paper proposes VisAC, an interactive tool to support the visual analysis of consanguinity in individuals’ ancestry. The inbreeding coefficient is used as a measure of consanguinity. The coefficient corresponds to an estimate of the probability that two alleles (a variant of a given gene) in the DNA were inherited from the same individual. A visualization design and an interactive tool were developed with genealogists’ support. In addition, the feedback collected through a questionnaire about two demo videos and tests with three target users strongly supports the effectiveness of the family tree visual representation and the adequacy of the interactive tool for the exploratory analysis task. Real-world examples are given to illustrate the usefulness of the visualization design, and an example of exploratory analysis is presented to illustrate the use of the interactive tool. In summary, this work formulates the task of visual analysis of consanguinity in ancestors’ trees and proposes VisAC, a new visualization tool to support the task.
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来源期刊
Information Visualization
Information Visualization COMPUTER SCIENCE, SOFTWARE ENGINEERING-
CiteScore
5.40
自引率
0.00%
发文量
16
审稿时长
>12 weeks
期刊介绍: Information Visualization is essential reading for researchers and practitioners of information visualization and is of interest to computer scientists and data analysts working on related specialisms. This journal is an international, peer-reviewed journal publishing articles on fundamental research and applications of information visualization. The journal acts as a dedicated forum for the theories, methodologies, techniques and evaluations of information visualization and its applications. The journal is a core vehicle for developing a generic research agenda for the field by identifying and developing the unique and significant aspects of information visualization. Emphasis is placed on interdisciplinary material and on the close connection between theory and practice. This journal is a member of the Committee on Publication Ethics (COPE).
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