基于LncRNAWiki和LncBook的人类长链非编码rna的社区管理和专家管理

Q1 Biochemistry, Genetics and Molecular Biology Current protocols in bioinformatics Pub Date : 2019-06-20 DOI:10.1002/cpbi.82
Lina Ma, Jiabao Cao, Lin Liu, Zhao Li, Huma Shireen, Nashaiman Pervaiz, Fatima Batool, Rabail Z. Raza, Dong Zou, Yiming Bao, Amir A. Abbasi, Zhang Zhang
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引用次数: 6

摘要

近年来,已鉴定的人类长链非编码rna (lncRNAs)数量呈指数级增长。然而,与蛋白质编码基因相比,这些lncrna的注释较差,这为更好地理解其功能意义和阐明其复杂的功能分子机制带来了巨大的挑战。在这里,我们采用社区和专家策展来产生人类lncrna及其注释的综合集合。具体来说,LncRNAWiki (http://lncrna.big.ac.cn/index.php/Main_Page)使用了基于维基的社区管理模式,因此在处理生物知识的洪水方面显示出很大的希望,而lnbook (http://bigd.big.ac.cn/lncbook)是一个基于专家管理的数据库,为LncRNAWiki提供了补充。lnbook的特点是通过多组学数据集成、功能注释和疾病关联,全面收集人类lncrna,并对lncrna进行系统管理。这些协议提供了如何浏览和搜索特定lncRNA以及如何获得一系列相关信息的分步说明,包括表达,甲基化,变异,功能和疾病关联。©2019 by John Wiley &儿子,Inc。
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Community Curation and Expert Curation of Human Long Noncoding RNAs with LncRNAWiki and LncBook

In recent years, the number of human long noncoding RNAs (lncRNAs) that have been identified has increased exponentially. However, these lncRNAs are poorly annotated compared to protein-coding genes, posing great challenges for a better understanding of their functional significance and elucidating their complex functioning molecular mechanisms. Here we employ both community and expert curation to yield a comprehensive collection of human lncRNAs and their annotations. Specifically, LncRNAWiki (http://lncrna.big.ac.cn/index.php/Main_Page) uses a wiki-based community curation model, thus showing great promise in dealing with the flood of biological knowledge, while LncBook (http://bigd.big.ac.cn/lncbook) is an expert curation–based database that provides a complement to LncRNAWiki. LncBook features a comprehensive collection of human lncRNAs and a systematic curation of lncRNAs by multi-omics data integration, functional annotation, and disease association. These protocols provide step-by-step instructions on how to browse and search a specific lncRNA and how to obtain a range of related information including expression, methylation, variation, function, and disease association. © 2019 by John Wiley & Sons, Inc.

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Current protocols in bioinformatics
Current protocols in bioinformatics Biochemistry, Genetics and Molecular Biology-Biochemistry
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期刊介绍: With Current Protocols in Bioinformatics, it"s easier than ever for the life scientist to become "fluent" in bioinformatics and master the exciting new frontiers opened up by DNA sequencing. Updated every three months in all formats, CPBI is constantly evolving to keep pace with the very latest discoveries and developments.
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Issue Information Protein Sequence Analysis Using the MPI Bioinformatics Toolkit Exploring Manually Curated Annotations of Intrinsically Disordered Proteins with DisProt Network Building with the Cytoscape BioGateway App Explained in Five Use Cases Issue Information
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