基于细胞色素氧化酶C亚基- i基因的1949年弯叶线虫分子系统发育分析

Q4 Agricultural and Biological Sciences Genetics of Aquatic Organisms Pub Date : 2023-01-19 DOI:10.4194/ga565
Famil Yusufoglu, F. Uçkan
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引用次数: 0

摘要

翅目物种既是淡水指标,也是河流生态系统食物链中的关键角色。此外,它们构成了一个具有高度物种形成能力的目。因此,在物种水平上通过形态分析进行鉴定会导致可靠性问题。属于这一目的弯曲线虫的系统发育研究在文献中很少。采集了kocaeli - trkiye的标本,并对标本进行了形态和系统发育描述。对线粒体DNA细胞色素氧化酶C亚基- 1基因区域进行扩增和测序。分子分析结果表明,这些样品属于弯曲芽孢杆菌属。通过将欧洲弯尾草单倍型的基因序列与相同碱基对长度的基因序列以及与作为外群的北方两栖的基因序列进行比较,进行了系统发育分析。两种系统发育树一致,所采集标本在进化上更接近于OK316196.1、OK316261.1、OK316397.1、MZ608304.1、KY261370.1和JX905853.1单倍型。报道了在科卡埃利地区存在的弯曲单倍体及其 rkiye单倍型的系统发育状况。阐明重要生态物种的系统发育状况,为今后的生物安全研究提供基础信息。
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Molecular Phylogenetic Analysis of Nemoura flexuosa Aubert, 1949 Based on Cytochrome Oxidase C Subunit-I Gene from Türkiye
Plecoptera species are valuable both as freshwater indicators and as key role in the food chain of river ecosystems. Moreover, they constitute an order with a high speciation capacity. Therefore, identification at the species level by morphological analysis leads to reliability problems. Studies on the phylogeny of Nemoura flexuosa which belongs to this order are scarce in the literature. Samples were collected from Kocaeli-Türkiye and then morphological and phylogenetic descriptions of the specimens were made. The Cytochrome Oxidase C Subunit-I gene region in mitochondrial DNA was amplified and sequenced. Molecular analyses revealed that the samples belong to the N. flexuosa species. Phylogenetic analyses were carried out by comparing the gene sequences of N. flexuosa haplotypes in Europe with gene sequences of the same basepair length and with the gene sequence of Amphinemura borealis which was used as an outgroup. The two phylogenetic trees were consistent and the collected specimens were evolutionarily closer to the OK316196.1, OK316261.1, OK316397.1, MZ608304.1, KY261370.1 and JX905853.1 haplotype. The presence of N. flexuosa in Kocaeli and the phylogenetic status of the Türkiye haplotype were reported. Clarifying the phylogenetic status of ecologically important species provides basic information for biosecurity studies for possible future conservation and control programs.
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来源期刊
Genetics of Aquatic Organisms
Genetics of Aquatic Organisms Agricultural and Biological Sciences-Aquatic Science
CiteScore
0.90
自引率
0.00%
发文量
8
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