{"title":"基于定量构效关系预测癌症活性化合物","authors":"H. Hanafi, B. D. Rossi Hassani, M’hamed Aït Kbir","doi":"10.11591/ijece.v13i5.pp5755-5763","DOIUrl":null,"url":null,"abstract":"Recently, advancements in computational and artificial intelligence (AI) methods have contributed in improving research results in the field of drug discovery. In fact, machine learning techniques have proven to be especially effective in this regard, aiding in the development of new drug variants and enabling more precise targeting of specific disease mechanisms. In this paper, we propose to use a quantitative structure-activity relationship-based approach for predicting active compounds related to non-small cell lung cancer. Our approach uses a neural network classifier that learns from sequential structures and chemical properties of molecules, as well as a gradient boosting tree classifier to conduct comparative analysis. To evaluate the contribution of each feature, we employ Shapley additive explanations (SHAP) summary plots to perform features selection. Our approach involves a dataset of active and non-active molecules collected from ChEMBL database. Our results show the effectiveness of the proposed approach when it comes to predicting accurately active compounds for lung cancer. Furthermore, our comparative analysis reveals important chemical structures that contribute to the effectiveness of the compounds. Thus, the proposed approach can greatly enhance the drug discovery pipeline and may lead to the development of new and effective treatments for lung cancer.","PeriodicalId":38060,"journal":{"name":"International Journal of Electrical and Computer Engineering","volume":" ","pages":""},"PeriodicalIF":0.0000,"publicationDate":"2023-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Predicting active compounds for lung cancer based on quantitative structure-activity relationships\",\"authors\":\"H. Hanafi, B. D. Rossi Hassani, M’hamed Aït Kbir\",\"doi\":\"10.11591/ijece.v13i5.pp5755-5763\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Recently, advancements in computational and artificial intelligence (AI) methods have contributed in improving research results in the field of drug discovery. In fact, machine learning techniques have proven to be especially effective in this regard, aiding in the development of new drug variants and enabling more precise targeting of specific disease mechanisms. In this paper, we propose to use a quantitative structure-activity relationship-based approach for predicting active compounds related to non-small cell lung cancer. Our approach uses a neural network classifier that learns from sequential structures and chemical properties of molecules, as well as a gradient boosting tree classifier to conduct comparative analysis. To evaluate the contribution of each feature, we employ Shapley additive explanations (SHAP) summary plots to perform features selection. Our approach involves a dataset of active and non-active molecules collected from ChEMBL database. Our results show the effectiveness of the proposed approach when it comes to predicting accurately active compounds for lung cancer. Furthermore, our comparative analysis reveals important chemical structures that contribute to the effectiveness of the compounds. Thus, the proposed approach can greatly enhance the drug discovery pipeline and may lead to the development of new and effective treatments for lung cancer.\",\"PeriodicalId\":38060,\"journal\":{\"name\":\"International Journal of Electrical and Computer Engineering\",\"volume\":\" \",\"pages\":\"\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2023-10-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"International Journal of Electrical and Computer Engineering\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.11591/ijece.v13i5.pp5755-5763\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"Computer Science\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"International Journal of Electrical and Computer Engineering","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.11591/ijece.v13i5.pp5755-5763","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"Computer Science","Score":null,"Total":0}
Predicting active compounds for lung cancer based on quantitative structure-activity relationships
Recently, advancements in computational and artificial intelligence (AI) methods have contributed in improving research results in the field of drug discovery. In fact, machine learning techniques have proven to be especially effective in this regard, aiding in the development of new drug variants and enabling more precise targeting of specific disease mechanisms. In this paper, we propose to use a quantitative structure-activity relationship-based approach for predicting active compounds related to non-small cell lung cancer. Our approach uses a neural network classifier that learns from sequential structures and chemical properties of molecules, as well as a gradient boosting tree classifier to conduct comparative analysis. To evaluate the contribution of each feature, we employ Shapley additive explanations (SHAP) summary plots to perform features selection. Our approach involves a dataset of active and non-active molecules collected from ChEMBL database. Our results show the effectiveness of the proposed approach when it comes to predicting accurately active compounds for lung cancer. Furthermore, our comparative analysis reveals important chemical structures that contribute to the effectiveness of the compounds. Thus, the proposed approach can greatly enhance the drug discovery pipeline and may lead to the development of new and effective treatments for lung cancer.
期刊介绍:
International Journal of Electrical and Computer Engineering (IJECE) is the official publication of the Institute of Advanced Engineering and Science (IAES). The journal is open to submission from scholars and experts in the wide areas of electrical, electronics, instrumentation, control, telecommunication and computer engineering from the global world. The journal publishes original papers in the field of electrical, computer and informatics engineering which covers, but not limited to, the following scope: -Electronics: Electronic Materials, Microelectronic System, Design and Implementation of Application Specific Integrated Circuits (ASIC), VLSI Design, System-on-a-Chip (SoC) and Electronic Instrumentation Using CAD Tools, digital signal & data Processing, , Biomedical Transducers and instrumentation, Medical Imaging Equipment and Techniques, Biomedical Imaging and Image Processing, Biomechanics and Rehabilitation Engineering, Biomaterials and Drug Delivery Systems; -Electrical: Electrical Engineering Materials, Electric Power Generation, Transmission and Distribution, Power Electronics, Power Quality, Power Economic, FACTS, Renewable Energy, Electric Traction, Electromagnetic Compatibility, High Voltage Insulation Technologies, High Voltage Apparatuses, Lightning Detection and Protection, Power System Analysis, SCADA, Electrical Measurements; -Telecommunication: Modulation and Signal Processing for Telecommunication, Information Theory and Coding, Antenna and Wave Propagation, Wireless and Mobile Communications, Radio Communication, Communication Electronics and Microwave, Radar Imaging, Distributed Platform, Communication Network and Systems, Telematics Services and Security Network; -Control[...] -Computer and Informatics[...]