预测为肿瘤抑制因子的假设蛋白质:蛋白质功能分析

M. Kader, Akash Ahammed, Md. Sharif Khan, Sheikh Abdullah Al Ashik, M. Islam, Mohammad Uzzal Hossain
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摘要

Litorilitus sediminis是一种革兰氏阴性、需氧、新细菌,隶属于冬青科,有一个令人惊叹的假设蛋白质含有结构域,称为von Hippel-Lindau,具有显著的肿瘤抑制活性。因此,本研究旨在使用几种生物信息学工具阐明具有生物学意义的假设蛋白EMK97_00595(QBG34344.1)的结构和功能。功能注释表明,假设的蛋白质是一种细胞外分泌可溶性信号肽,含有在肿瘤抑制中发挥重要作用的von Hippel-Lindau(VHL;VHLβ)结构域。这个结构域在整个进化过程中都是保守的,因为它的同源物存在于各种类型的生物体中,如哺乳动物、昆虫和线虫。VHL的基因产物在普遍存在的氧感应途径中具有关键的调节活性。该结构域在抑制细胞增殖、血管生成进展、肾脏癌症、癌症乳腺癌和癌症中具有重要作用。最后,目前的研究表明,注释的假设蛋白与肿瘤抑制活性有关,这可能对未来高等生物的研究具有重要意义。
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Hypothetical protein predicted to be tumor suppressor: a protein functional analysis
Litorilituus sediminis is a Gram-negative, aerobic, novel bacterium under the family of Colwelliaceae, has a stunning hypothetical protein containing domain called von Hippel-Lindau that has significant tumor suppressor activity. Therefore, this study was designed to elucidate the structure and function of the biologically important hypothetical protein EMK97_00595 (QBG34344.1) using several bioinformatics tools. The functional annotation exposed that the hypothetical protein is an extracellular secretory soluble signal peptide and contains the von Hippel-Lindau (VHL; VHL beta) domain that has a significant role in tumor suppression. This domain is conserved throughout evolution, as its homologs are available in various types of the organism like mammals, insects, and nematode. The gene product of VHL has a critical regulatory activity in the ubiquitous oxygen-sensing pathway. This domain has a significant role in inhibiting cell proliferation, angiogenesis progression, kidney cancer, breast cancer, and colon cancer. At last, the current study depicts that the annotated hypothetical protein is linked with tumor suppressor activity which might be of great interest to future research in the higher organism.
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