产氢蓝藻——platarthrospira NIES-46的基因组草图

Shigekatsu Suzuki, Haruyo Yamaguchi, M. Kawachi
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引用次数: 6

摘要

节螺旋藻是一种具有重要经济价值的蓝藻,它含有许多有用的产物,包括蛋白质、维生素、脂质和色素,分布在几个碱性碱湖中。platarthrospira NIES-46产生大量氢气。在本研究中,我们对尼斯-46草图基因组进行了测序,并在节螺旋体物种之间进行了比较分析,以阐明该菌株的基因组背景。该基因组由5.7 Mbp组成,GC%为44.5%,编码5,008种蛋白质。通过多个同源蛋白的系统发育分析,我们发现Arthrospira可分为两个支系,其中NIES-46与A. platensis NIES-39亲缘关系较近。platensis NIES-39和NIES-46的基因组结构和蛋白质功能高度保守,表明这两个菌株最近发生了分化。与产氢有关的基因在节肢动物物种中保存良好,这表明产氢的能力是保守的。
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The Draft Genome of a Hydrogen-producing Cyanobacterium, Arthrospira platensis NIES-46
Arthrospira is an economically important cyanobacterium that contains many useful products, including proteins, vitamins, lipids, and pigments, and it is distributed in several alkaline soda lakes. Arthrospira platensis NIES-46 produces large amounts of hydrogen. In this study, we sequenced the NIES-46 draft genome and performed comparative analyses among Arthrospira species to elucidate the genomic background of this strain. The genome consists of 5.7 Mbp with a GC% of 44.5% and encodes 5,008 proteins. Our phylogenetic analysis using multiple orthologous proteins shows that Arthrospira is divided into two clades and that NIES-46 is closely related to A. platensis NIES-39. The genome structure and protein functions are highly conserved between A. platensis NIES-39 and NIES-46, suggesting that these two strains have recently diverged. Genes involved in hydrogen production are well-conserved among Arthrospira species, indicating conserved abilities to produce hydrogen.
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来源期刊
自引率
0.00%
发文量
11
审稿时长
12 weeks
期刊介绍: Journal of Genomics publishes papers of high quality in all areas of gene, genetics, genomics, proteomics, metabolomics, DNA/RNA, computational biology, bioinformatics, and other relevant areas of research and application. Articles published by the journal are rigorously peer-reviewed. Types of articles include: Research paper, Short research communication, Review or mini-reviews, Commentary, Database, Software.
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