NEIL3介导癌症进展并调节PI3K/AKT/mTOR信号:一种潜在的治疗靶点

IF 2.6 4区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY International Journal of Genomics Pub Date : 2022-04-30 DOI:10.1155/2022/8348499
Hongbo Huang, Qingwang Hua
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Quantitative real-time PCR (qRT-PCR) and western blot analyses were utilized to detect RNA and protein levels. Biological differences between groups were determined by gene set enrichment analysis (GSEA). Tumor Immune Dysfunction and Exclusion (TIDE) as well as Genomics of Drug Sensitivity in Cancer (GDSC) was used for immunotherapeutic and chemotherapeutic sensitivity analyses. Results NEIL3 was upregulated in NSCLC tissues and cell lines, implying that it is involved in lung cancer initiation and progression. Clinical correlation and prognostic analyses showed that NEIL3 was associated with worse clinical features (stage and T and N classifications) and poor prognostic outcomes. In vitro, NEIL3 significantly enhanced NSCLC proliferation, invasion, and migration. GSEA indicated that NEIL3 might be involved in PI3K/AKT/mTOR, G2/M checkpoints, and E2F target pathways. Inhibition of NEIL3 suppressed cyclinD1 and p-AKT protein levels; however, it had no effects on AKT levels, indicating that NEIL3 can partially activate the PI3K/AKT/mTOR signaling pathway. The predicted result of TIDE indicated that immunotherapeutic nonresponders had elevated NEIL3 levels. Moreover, there was a positive correlation between NEIL3 levels and chemosensitivity to cisplatin and paclitaxel. 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引用次数: 5

摘要

Nei内切酶VIII-like 3 (NEIL3)广泛参与机体的病理生理过程;然而,它在肺癌中的作用尚未得到最终确定。目的探讨NEIL3在肺癌中的作用。方法从美国癌症基因组图谱(TCGA)数据库中下载公开数据。R中的“Limma”用于分析差异表达基因。临床相关性和预后分析使用r中的生存包进行。肺癌细胞的增殖能力通过CCK8和集落形成试验来评估,而它们的侵袭和迁移能力通过transwell和伤口愈合试验来评估。采用实时荧光定量PCR (Quantitative real-time PCR, qRT-PCR)和western blot检测RNA和蛋白水平。通过基因集富集分析(GSEA)确定各组间的生物学差异。肿瘤免疫功能障碍和排斥(TIDE)以及肿瘤药物敏感性基因组学(GDSC)用于免疫治疗和化疗敏感性分析。结果NEIL3在NSCLC组织和细胞系中表达上调,提示其参与肺癌的发生和发展。临床相关性和预后分析显示,NEIL3与较差的临床特征(分期和T、N级)和较差的预后相关。在体外,NEIL3显著增强NSCLC的增殖、侵袭和迁移。GSEA表明NEIL3可能参与PI3K/AKT/mTOR、G2/M检查点和E2F靶点通路。抑制NEIL3抑制cyclinD1和p-AKT蛋白水平;然而,它对AKT水平没有影响,表明NEIL3可以部分激活PI3K/AKT/mTOR信号通路。TIDE预测结果显示免疫治疗无应答者NEIL3水平升高。此外,NEIL3水平与顺铂和紫杉醇化疗敏感性呈正相关。结论总的来说,NEIL3介导NSCLC的进展并影响免疫治疗和化疗的敏感性;因此,它是一个潜在的治疗分子靶点。
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NEIL3 Mediates Lung Cancer Progression and Modulates PI3K/AKT/mTOR Signaling: A Potential Therapeutic Target
Background Nei endonuclease VIII-like 3 (NEIL3) is widely involved in pathophysiological processes of the body; however, its role in lung cancer has not been conclusively determined. Objective This study is aimed at exploring the role of NEIL3 in lung cancer. Methods The public data used in this study were downloaded from The Cancer Genome Atlas (TCGA) database. “Limma” in R was used for the analysis of differentially expressed genes. Clinical correlations and prognostic analyses were performed using the survival package in R. The proliferative abilities of lung cancer cells were evaluated by the CCK8 and colony formation assays while their invasive and migration abilities were assessed by the transwell and wound healing assays. Quantitative real-time PCR (qRT-PCR) and western blot analyses were utilized to detect RNA and protein levels. Biological differences between groups were determined by gene set enrichment analysis (GSEA). Tumor Immune Dysfunction and Exclusion (TIDE) as well as Genomics of Drug Sensitivity in Cancer (GDSC) was used for immunotherapeutic and chemotherapeutic sensitivity analyses. Results NEIL3 was upregulated in NSCLC tissues and cell lines, implying that it is involved in lung cancer initiation and progression. Clinical correlation and prognostic analyses showed that NEIL3 was associated with worse clinical features (stage and T and N classifications) and poor prognostic outcomes. In vitro, NEIL3 significantly enhanced NSCLC proliferation, invasion, and migration. GSEA indicated that NEIL3 might be involved in PI3K/AKT/mTOR, G2/M checkpoints, and E2F target pathways. Inhibition of NEIL3 suppressed cyclinD1 and p-AKT protein levels; however, it had no effects on AKT levels, indicating that NEIL3 can partially activate the PI3K/AKT/mTOR signaling pathway. The predicted result of TIDE indicated that immunotherapeutic nonresponders had elevated NEIL3 levels. Moreover, there was a positive correlation between NEIL3 levels and chemosensitivity to cisplatin and paclitaxel. Conclusion In general, NEIL3 mediates NSCLC progression and affects sensitivity to immunotherapy and chemotherapy; therefore, it is a potential molecular target for treatment.
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来源期刊
International Journal of Genomics
International Journal of Genomics BIOCHEMISTRY & MOLECULAR BIOLOGY-BIOTECHNOLOGY & APPLIED MICROBIOLOGY
CiteScore
5.40
自引率
0.00%
发文量
33
审稿时长
17 weeks
期刊介绍: International Journal of Genomics is a peer-reviewed, Open Access journal that publishes research articles as well as review articles in all areas of genome-scale analysis. Topics covered by the journal include, but are not limited to: bioinformatics, clinical genomics, disease genomics, epigenomics, evolutionary genomics, functional genomics, genome engineering, and synthetic genomics.
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