用于地下进化比较研究的合作骨干资源:世界昆虫科数据库。

IF 5.5 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Molecular Ecology Resources Pub Date : 2023-10-21 DOI:10.1111/1755-0998.13882
Nathanaelle Saclier, Louis Duchemin, Lara Konecny-Dupré, Philippe Grison, David Eme, Chloé Martin, Cécile Callou, Tristan Lefébure, Clémentine François, Colin Issartel, Julian J. Lewis, Fabio Stoch, Boris Sket, Sanja Gottstein, Teo Delić, Maja Zagmajster, Michal Grabowski, Dieter Weber, Ana Sofia P. S. Reboleira, Dmitry Palatov, Kaloust Paragamian, Lee R. F. D. Knight, Georges Michel, Francois Lefebvre, Mohammad-Javad Malek Hosseini, Ana I. Camacho, Begoña Gartzia De Bikuña, Amina Taleb, Nouria Belaidi, Raoul P. Tuekam Kayo, Diana Maria Paola Galassi, Oana Teodora Moldovan, Christophe J. Douady, Florian Malard
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引用次数: 0

摘要

向新环境的过渡,如地表生物对地下水的定殖,为研究表型进化提供了极好的研究基础。然而,关于地下水生命进化的种间比较研究很少,因为在为由地表和地下物种组成的物种丰富的类群组装大型生态和分子资源方面存在挑战。在这里,我们向科学界提供了一套可操作的工作工具和资源,用于软体动物科,软体动物科是一个淡水等足类动物科,包含数百种地表和地下物种。首先,我们发布了世界昆虫科数据库(WAD)及其网络应用程序,这是一个可持续的FAIR解决方案,用于生产和共享数据和生物材料。WAD提供了数千种物种的出现、标本、DNA提取物和DNA序列的访问,并提供了丰富的元数据,确保了完全的科学可追溯性。其次,我们对水母科进行了大规模的系统发育重建,以支持系统发育比较分析。在424个末端分支中,我们确定了34对地表和地下物种,它们代表了从地表水到地下水过渡的独立复制。第三,我们举例说明WAD在记录与地下栖息地定殖相关的表型变化方面的有用性。我们提供了第一个系统发育控制的证据,证明在地下水定殖后,雄性的体型相对于雌性有所缩小,这表明在地下水中,罕见的接受性雌性的竞争选择了更小、更敏捷的雄性。通过使这些工具和资源广泛可用,我们为探索表型性状如何在地下水定殖过程中响应选择性压力和权衡的变化而进化开辟了新的机会。
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A collaborative backbone resource for comparative studies of subterranean evolution: The World Asellidae database

Transition to novel environments, such as groundwater colonization by surface organisms, provides an excellent research ground to study phenotypic evolution. However, interspecific comparative studies on evolution to groundwater life are few because of the challenge in assembling large ecological and molecular resources for species-rich taxa comprised of surface and subterranean species. Here, we make available to the scientific community an operational set of working tools and resources for the Asellidae, a family of freshwater isopods containing hundreds of surface and subterranean species. First, we release the World Asellidae database (WAD) and its web application, a sustainable and FAIR solution to producing and sharing data and biological material. WAD provides access to thousands of species occurrences, specimens, DNA extracts and DNA sequences with rich metadata ensuring full scientific traceability. Second, we perform a large-scale dated phylogenetic reconstruction of Asellidae to support phylogenetic comparative analyses. Of 424 terminal branches, we identify 34 pairs of surface and subterranean species representing independent replicates of the transition from surface water to groundwater. Third, we exemplify the usefulness of WAD for documenting phenotypic shifts associated with colonization of subterranean habitats. We provide the first phylogenetically controlled evidence that body size of males decreases relative to that of females upon groundwater colonization, suggesting competition for rare receptive females selects for smaller, more agile males in groundwater. By making these tools and resources widely accessible, we open up new opportunities for exploring how phenotypic traits evolve in response to changes in selective pressures and trade-offs during groundwater colonization.

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来源期刊
Molecular Ecology Resources
Molecular Ecology Resources 生物-进化生物学
CiteScore
15.60
自引率
5.20%
发文量
170
审稿时长
3 months
期刊介绍: Molecular Ecology Resources promotes the creation of comprehensive resources for the scientific community, encompassing computer programs, statistical and molecular advancements, and a diverse array of molecular tools. Serving as a conduit for disseminating these resources, the journal targets a broad audience of researchers in the fields of evolution, ecology, and conservation. Articles in Molecular Ecology Resources are crafted to support investigations tackling significant questions within these disciplines. In addition to original resource articles, Molecular Ecology Resources features Reviews, Opinions, and Comments relevant to the field. The journal also periodically releases Special Issues focusing on resource development within specific areas.
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