土拉菌(Francisella tularensis, Ftu-1) a类β-内酰胺酶的独特亚类特征及其对AMR的认识

IF 3.8 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY ACS Bio & Med Chem Au Pub Date : 2023-02-08 DOI:10.1021/acsbiomedchemau.2c00044
Sourya Bhattacharya, Vivek Junghare, Mousumi Hazra, Niteesh Kumar Pandey, Abirlal Mukherjee, Kunal Dhankhar, Neeladrisingha Das, Partha Roy, Ramesh Chandra Dubey and Saugata Hazra*, 
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引用次数: 0

摘要

致病菌株中产生的β-内酰胺酶具有巨大的催化差异,限制了临床环境中的抗生素谱。A类碳青霉烯酶具有显著的序列相似性、结构特征和共同的催化机制,尽管它们在碳青霉烯和单内酰胺水解方面的抗性谱与A类β-内酰胺酶不同。换句话说,它限制了对抗感染的抗生素治疗选择,导致产生碳青霉烯酶的超级细菌。Ftu-1是一种a类β-内酰胺酶,由土拉氏弗朗西斯杆菌菌株表达,该菌株是土拉雷米病的有力致病菌。染色体编码的A类β-内酰胺酶共有两个保守的半胱氨酸残基,这是碳青霉烯酶的共同特征,也是系统发育树中的一个独特类别。对酶进行了完整的生物化学和生物物理表征,以了解最佳性能的总体稳定性和环境要求。为了了解酶与药物的相互作用及其对β-内酰胺和β-内酶抑制剂的各种化学性质的影响,使用各种β-内胺药物进行了全面的动力学和热力学分析。还利用分子动力学(MD)模拟预测了Ftu-1β-内酰胺酶的动力学性质,以比较其环的灵活性和与其他相关A类β-内酶的配体结合。总的来说,这项研究促进了对Ftu-1的全面理解,Ftu-1通过表征其动力学特征、生物化学和生物物理方法的稳定性以及易感性特征被认为是一个中间类。这种理解将有利于新一代治疗方法的设计。
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Characterization of a Class A β-Lactamase from Francisella tularensis (Ftu-1) Belonging to a Unique Subclass toward Understanding AMR

β-lactamase production with vast catalytic divergence in the pathogenic strain limits the antibiotic spectrum in the clinical environment. Class A carbapenemase shares significant sequence similarities, structural features, and common catalytic mechanisms although their resistance spectrum differs from class A β-lactamase in carbapenem and monobactam hydrolysis. In other words, it limited the antibiotic treatment option against infection, causing carbapenemase-producing superbugs. Ftu-1 is a class A β-lactamase expressed by the Francisella tularensis strain, a potent causative organism of tularemia. The chromosomally encoded class A β-lactamase shares two conserved cysteine residues, a common characteristic of a carbapenemase, and a distinctive class in the phylogenetic tree. Complete biochemical and biophysical characterization of the enzyme was performed to understand the overall stability and environmental requirements to perform optimally. To comprehend the enzyme–drug interaction and its profile toward various chemistries of β-lactam and β-lactamase inhibitors, comprehensive kinetic and thermodynamic analyses were conducted using various β-lactam drugs. The dynamic property of Ftu-1 β-lactamase was also predicted using molecular dynamics (MD) simulation to compare its loop flexibility and ligand binding with other related class A β-lactamases. Overall, this study fosters a comprehensive understanding of Ftu-1, proposed to be an intermediate class by characterizing its kinetic profiling, stability by biochemical and biophysical methodologies, and susceptibility profiling. This understanding would be beneficial for the design of new-generation therapeutics.

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ACS Bio & Med Chem Au
ACS Bio & Med Chem Au 药物、生物、化学-
CiteScore
4.10
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期刊介绍: ACS Bio & Med Chem Au is a broad scope open access journal which publishes short letters comprehensive articles reviews and perspectives in all aspects of biological and medicinal chemistry. Studies providing fundamental insights or describing novel syntheses as well as clinical or other applications-based work are welcomed.This broad scope includes experimental and theoretical studies on the chemical physical mechanistic and/or structural basis of biological or cell function in all domains of life. It encompasses the fields of chemical biology synthetic biology disease biology cell biology agriculture and food natural products research nucleic acid biology neuroscience structural biology and biophysics.The journal publishes studies that pertain to a broad range of medicinal chemistry including compound design and optimization biological evaluation molecular mechanistic understanding of drug delivery and drug delivery systems imaging agents and pharmacology and translational science of both small and large bioactive molecules. Novel computational cheminformatics and structural studies for the identification (or structure-activity relationship analysis) of bioactive molecules ligands and their targets are also welcome. The journal will consider computational studies applying established computational methods but only in combination with novel and original experimental data (e.g. in cases where new compounds have been designed and tested).Also included in the scope of the journal are articles relating to infectious diseases research on pathogens host-pathogen interactions therapeutics diagnostics vaccines drug-delivery systems and other biomedical technology development pertaining to infectious diseases.
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