质子检测四共振3D 2Hαcα nh MAS核磁共振谱图的位点特异性蛋白主干氘2Hα四极性图谱

IF 1.8 3区 化学 Q4 CHEMISTRY, PHYSICAL Solid state nuclear magnetic resonance Pub Date : 2023-06-01 DOI:10.1016/j.ssnmr.2023.101861
Ümit Akbey
{"title":"质子检测四共振3D 2Hαcα nh MAS核磁共振谱图的位点特异性蛋白主干氘2Hα四极性图谱","authors":"Ümit Akbey","doi":"10.1016/j.ssnmr.2023.101861","DOIUrl":null,"url":null,"abstract":"<div><p>A novel deuterium-excited and proton-detected quadruple-resonance three-dimensional (3D) <sup>2</sup>H<sub>α</sub>c<sub>α</sub><span><span>NH MAS </span>nuclear magnetic resonance (NMR) method is presented to obtain site-specific </span><sup>2</sup>H<sub>α</sub><span> deuterium quadrupolar couplings from protein backbone, as an extension to the 2D version of the experiment reported earlier. Proton-detection results in high sensitivity compared to the heteronuclei detection methods. Utilizing four independent radiofrequency (RF) channels (quadruple-resonance), we managed to excite the </span><sup>2</sup>H<sub>α</sub>, then transfer deuterium polarization to its attached C<sub>α</sub><span>, followed by polarization transfers to the neighboring backbone nitrogen and then to the amide proton for detection. This experiment results in an easy to interpret HSQC-like 2D </span><sup>1</sup>H–<sup>15</sup><span>N fingerprint NMR spectrum, which contains site-specific deuterium quadrupolar patterns in the indirect third dimension. Provided that four-channel NMR probe technology is available, the setup of the </span><sup>2</sup>H<sub>α</sub>c<sub>α</sub>NH experiment is relatively straightforward, by using low power deuterium excitation and polarization transfer schemes we have been developing. To our knowledge, this is the first demonstration of a quadruple-resonance MAS NMR experiment to link <sup>2</sup>H<sub>α</sub> quadrupolar couplings to proton-detection, extending our previous triple-resonance demonstrations. Distortion-free excitation and polarization transfer of ∼160–170 kHz <sup>2</sup>H<sub>α</sub><span> quadrupolar coupling were presented by using a deuterium RF strength of ∼20 kHz. From these </span><sup>2</sup>H<sub>α</sub> patterns, an average backbone order parameter of S = 0.92 was determined on a deuterated SH3 sample, with an average η = 0.22. These indicate that SH3 backbone represents sizable dynamics in the microsecond timescale where the <sup>2</sup>H<sub>α</sub> lineshape is sensitive. Moreover, site-specific <sup>2</sup>H<sub>α</sub> T<sub>1</sub> relaxation times were obtained for a proof of concept. This 3D <sup>2</sup>H<sub>α</sub>c<sub>α</sub>NH NMR experiment has the potential to determine structure and dynamics of perdeuterated proteins by utilizing deuterium as a novel reporter.</p></div>","PeriodicalId":21937,"journal":{"name":"Solid state nuclear magnetic resonance","volume":"125 ","pages":"Article 101861"},"PeriodicalIF":1.8000,"publicationDate":"2023-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"1","resultStr":"{\"title\":\"Site-specific protein backbone deuterium 2Hα quadrupolar patterns by proton-detected quadruple-resonance 3D 2HαcαNH MAS NMR spectroscopy\",\"authors\":\"Ümit Akbey\",\"doi\":\"10.1016/j.ssnmr.2023.101861\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><p>A novel deuterium-excited and proton-detected quadruple-resonance three-dimensional (3D) <sup>2</sup>H<sub>α</sub>c<sub>α</sub><span><span>NH MAS </span>nuclear magnetic resonance (NMR) method is presented to obtain site-specific </span><sup>2</sup>H<sub>α</sub><span> deuterium quadrupolar couplings from protein backbone, as an extension to the 2D version of the experiment reported earlier. Proton-detection results in high sensitivity compared to the heteronuclei detection methods. Utilizing four independent radiofrequency (RF) channels (quadruple-resonance), we managed to excite the </span><sup>2</sup>H<sub>α</sub>, then transfer deuterium polarization to its attached C<sub>α</sub><span>, followed by polarization transfers to the neighboring backbone nitrogen and then to the amide proton for detection. This experiment results in an easy to interpret HSQC-like 2D </span><sup>1</sup>H–<sup>15</sup><span>N fingerprint NMR spectrum, which contains site-specific deuterium quadrupolar patterns in the indirect third dimension. Provided that four-channel NMR probe technology is available, the setup of the </span><sup>2</sup>H<sub>α</sub>c<sub>α</sub>NH experiment is relatively straightforward, by using low power deuterium excitation and polarization transfer schemes we have been developing. To our knowledge, this is the first demonstration of a quadruple-resonance MAS NMR experiment to link <sup>2</sup>H<sub>α</sub> quadrupolar couplings to proton-detection, extending our previous triple-resonance demonstrations. Distortion-free excitation and polarization transfer of ∼160–170 kHz <sup>2</sup>H<sub>α</sub><span> quadrupolar coupling were presented by using a deuterium RF strength of ∼20 kHz. From these </span><sup>2</sup>H<sub>α</sub> patterns, an average backbone order parameter of S = 0.92 was determined on a deuterated SH3 sample, with an average η = 0.22. These indicate that SH3 backbone represents sizable dynamics in the microsecond timescale where the <sup>2</sup>H<sub>α</sub> lineshape is sensitive. Moreover, site-specific <sup>2</sup>H<sub>α</sub> T<sub>1</sub> relaxation times were obtained for a proof of concept. This 3D <sup>2</sup>H<sub>α</sub>c<sub>α</sub>NH NMR experiment has the potential to determine structure and dynamics of perdeuterated proteins by utilizing deuterium as a novel reporter.</p></div>\",\"PeriodicalId\":21937,\"journal\":{\"name\":\"Solid state nuclear magnetic resonance\",\"volume\":\"125 \",\"pages\":\"Article 101861\"},\"PeriodicalIF\":1.8000,\"publicationDate\":\"2023-06-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"1\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Solid state nuclear magnetic resonance\",\"FirstCategoryId\":\"92\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S0926204023000115\",\"RegionNum\":3,\"RegionCategory\":\"化学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q4\",\"JCRName\":\"CHEMISTRY, PHYSICAL\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Solid state nuclear magnetic resonance","FirstCategoryId":"92","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S0926204023000115","RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"CHEMISTRY, PHYSICAL","Score":null,"Total":0}
引用次数: 1

摘要

提出了一种新的氘激发和质子检测的四共振三维(3D) 2Hαcα nh MAS核磁共振(NMR)方法,用于从蛋白质骨架中获得特定位点的2Hα氘四极偶联,作为先前报道的2D版本实验的扩展。与异核检测方法相比,质子检测结果具有较高的灵敏度。利用四个独立的射频通道(四共振),我们成功地激发2Hα,然后将氘极化转移到其附着的Cα上,然后将极化转移到邻近的主氮上,然后转移到酰胺质子上进行检测。本实验获得了易于解释的类hsqc的二维1H-15N指纹核磁共振谱,该谱在间接三维空间中包含特定位点的氘四极模式。如果有四通道核磁共振探针技术,利用我们已经开发的低功率氘激发和极化转移方案,2HαcαNH实验的设置相对简单。据我们所知,这是第一个将2Hα四极偶联与质子检测联系起来的四共振MAS NMR实验的演示,扩展了我们之前的三共振演示。利用氘射频强度为~ 20 kHz,研究了~ 160 ~ 170 kHz 2h - α四极耦合的无畸变激发和极化转移。从这些2Hα谱图中,氘化SH3样品的平均主链序参数S = 0.92,平均η = 0.22。这表明SH3骨架在微秒时间尺度上表现出相当大的动态,其中2Hα线形是敏感的。此外,还获得了特定位点的2Hα T1弛豫时间,以证明概念。这个3D 2HαcαNH NMR实验有潜力利用氘作为新的报告因子来确定过氘化蛋白的结构和动力学。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

摘要图片

查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
Site-specific protein backbone deuterium 2Hα quadrupolar patterns by proton-detected quadruple-resonance 3D 2HαcαNH MAS NMR spectroscopy

A novel deuterium-excited and proton-detected quadruple-resonance three-dimensional (3D) 2HαcαNH MAS nuclear magnetic resonance (NMR) method is presented to obtain site-specific 2Hα deuterium quadrupolar couplings from protein backbone, as an extension to the 2D version of the experiment reported earlier. Proton-detection results in high sensitivity compared to the heteronuclei detection methods. Utilizing four independent radiofrequency (RF) channels (quadruple-resonance), we managed to excite the 2Hα, then transfer deuterium polarization to its attached Cα, followed by polarization transfers to the neighboring backbone nitrogen and then to the amide proton for detection. This experiment results in an easy to interpret HSQC-like 2D 1H–15N fingerprint NMR spectrum, which contains site-specific deuterium quadrupolar patterns in the indirect third dimension. Provided that four-channel NMR probe technology is available, the setup of the 2HαcαNH experiment is relatively straightforward, by using low power deuterium excitation and polarization transfer schemes we have been developing. To our knowledge, this is the first demonstration of a quadruple-resonance MAS NMR experiment to link 2Hα quadrupolar couplings to proton-detection, extending our previous triple-resonance demonstrations. Distortion-free excitation and polarization transfer of ∼160–170 kHz 2Hα quadrupolar coupling were presented by using a deuterium RF strength of ∼20 kHz. From these 2Hα patterns, an average backbone order parameter of S = 0.92 was determined on a deuterated SH3 sample, with an average η = 0.22. These indicate that SH3 backbone represents sizable dynamics in the microsecond timescale where the 2Hα lineshape is sensitive. Moreover, site-specific 2Hα T1 relaxation times were obtained for a proof of concept. This 3D 2HαcαNH NMR experiment has the potential to determine structure and dynamics of perdeuterated proteins by utilizing deuterium as a novel reporter.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
CiteScore
5.30
自引率
9.40%
发文量
42
审稿时长
72 days
期刊介绍: The journal Solid State Nuclear Magnetic Resonance publishes original manuscripts of high scientific quality dealing with all experimental and theoretical aspects of solid state NMR. This includes advances in instrumentation, development of new experimental techniques and methodology, new theoretical insights, new data processing and simulation methods, and original applications of established or novel methods to scientific problems.
期刊最新文献
Applications of NMR based methodologies investigating the behavior of lignin and cellulose towards bio-based carbon fibers production 17O NMR relaxation measurements for investigation of molecular dynamics in static solids using sodium nitrate as a model compound Solid-state NMR compositional analysis of sputum from people with cystic fibrosis Elucidating structure and metabolism of insect biomaterials by solid-state NMR Glucose hydrochar consists of linked phenol, furan, arene, alkyl, and ketone structures revealed by advanced solid-state nuclear magnetic resonance
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1