附在刚性、双金属、约束环体系上的肽的平行排列

IF 1.5 4区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Peptide Science Pub Date : 2022-06-04 DOI:10.1002/pep2.24286
T. Curran, A. Marrone, Lauren M. Davidson, Niranjana Pokharel, J. Frempong, I. Tolbatov, M. L. Phillip, Cosmic B. Gober, Haoyu Yang, J. Stewart
{"title":"附在刚性、双金属、约束环体系上的肽的平行排列","authors":"T. Curran, A. Marrone, Lauren M. Davidson, Niranjana Pokharel, J. Frempong, I. Tolbatov, M. L. Phillip, Cosmic B. Gober, Haoyu Yang, J. Stewart","doi":"10.1002/pep2.24286","DOIUrl":null,"url":null,"abstract":"Cyclic tungsten bis‐alkyne complexes derived from a 1,1′‐ferrocenyldialkyne (1 and 2) adopt a rigid conformation where the two alkynes are in a syn orientation and are likely positioned about 3.5 Å apart. Since intramolecular hydrogen bonding in protein secondary structures positions the donors and acceptors 3.3 Å apart, it is proposed that linking two peptides to the two alkynes in one of these complexes might be a way to generate a model system for generating peptide β‐sheets. To explore this question, a series of peptide derivatives of 1 were prepared. Attachment of peptides to the bimetallic ring system was achieved by reaction of peptide derivatives of 4‐iodobenzoic acid or 4‐iodoaniline with 1 via a Sonogashira coupling. Subsequent reaction of these dialkynes with W(CO)3(dmtc)2 (dmtc = dimethylditiocarbamate) afforded the desired cyclic tungsten bis‐alkyne complexes as a 1:1 mixture of diastereomers. The two diastereomers were not separable using typical chromatographic methods (TLC, HPLC and flash chromatography); however, their presence and relative amounts could be detected and measured in the 1H NMR spectra. The conformations of these peptide derivatives of 1 were examined using NMR and DFT methods. It was found that appending the peptides to the two alkynes did not alter the rigid conformation of the ferrocene‐tungsten bis‐alkyne ring system found in 1; the ring system remained rigid and retained the intramolecular hydrogen bond across the bimetallic ring system. Whether the amide and urethane NH protons in these complexes are involved in intramolecular hydrogen bonds was explored using a DMSO titration experiment and computational methods. Data from the DMSO titrations showed that there was only one robust intramolecular hydrogen bond, the hydrogen bond across the bimetallic ring; the other amide and urethane NH protons were accessible to the solvent. The DFT calculations showed the peptides attached to the bimetallic ring system can adopt a number of different orientations having similar energies, and that some of these conformations include cross‐strand hydrogen bonds. The data indicate that appending peptides to the bimetallic ring system via the two alkynes produces molecules where the two peptides are held in a parallel arrangement.","PeriodicalId":19825,"journal":{"name":"Peptide Science","volume":"114 1","pages":""},"PeriodicalIF":1.5000,"publicationDate":"2022-06-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Parallel arrangement of peptides appended to a rigid, bimetallic, constrained ring system\",\"authors\":\"T. Curran, A. Marrone, Lauren M. Davidson, Niranjana Pokharel, J. Frempong, I. Tolbatov, M. L. Phillip, Cosmic B. Gober, Haoyu Yang, J. Stewart\",\"doi\":\"10.1002/pep2.24286\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Cyclic tungsten bis‐alkyne complexes derived from a 1,1′‐ferrocenyldialkyne (1 and 2) adopt a rigid conformation where the two alkynes are in a syn orientation and are likely positioned about 3.5 Å apart. Since intramolecular hydrogen bonding in protein secondary structures positions the donors and acceptors 3.3 Å apart, it is proposed that linking two peptides to the two alkynes in one of these complexes might be a way to generate a model system for generating peptide β‐sheets. To explore this question, a series of peptide derivatives of 1 were prepared. Attachment of peptides to the bimetallic ring system was achieved by reaction of peptide derivatives of 4‐iodobenzoic acid or 4‐iodoaniline with 1 via a Sonogashira coupling. Subsequent reaction of these dialkynes with W(CO)3(dmtc)2 (dmtc = dimethylditiocarbamate) afforded the desired cyclic tungsten bis‐alkyne complexes as a 1:1 mixture of diastereomers. The two diastereomers were not separable using typical chromatographic methods (TLC, HPLC and flash chromatography); however, their presence and relative amounts could be detected and measured in the 1H NMR spectra. The conformations of these peptide derivatives of 1 were examined using NMR and DFT methods. It was found that appending the peptides to the two alkynes did not alter the rigid conformation of the ferrocene‐tungsten bis‐alkyne ring system found in 1; the ring system remained rigid and retained the intramolecular hydrogen bond across the bimetallic ring system. Whether the amide and urethane NH protons in these complexes are involved in intramolecular hydrogen bonds was explored using a DMSO titration experiment and computational methods. Data from the DMSO titrations showed that there was only one robust intramolecular hydrogen bond, the hydrogen bond across the bimetallic ring; the other amide and urethane NH protons were accessible to the solvent. The DFT calculations showed the peptides attached to the bimetallic ring system can adopt a number of different orientations having similar energies, and that some of these conformations include cross‐strand hydrogen bonds. The data indicate that appending peptides to the bimetallic ring system via the two alkynes produces molecules where the two peptides are held in a parallel arrangement.\",\"PeriodicalId\":19825,\"journal\":{\"name\":\"Peptide Science\",\"volume\":\"114 1\",\"pages\":\"\"},\"PeriodicalIF\":1.5000,\"publicationDate\":\"2022-06-04\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Peptide Science\",\"FirstCategoryId\":\"3\",\"ListUrlMain\":\"https://doi.org/10.1002/pep2.24286\",\"RegionNum\":4,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q4\",\"JCRName\":\"BIOCHEMISTRY & MOLECULAR BIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Peptide Science","FirstCategoryId":"3","ListUrlMain":"https://doi.org/10.1002/pep2.24286","RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"BIOCHEMISTRY & MOLECULAR BIOLOGY","Score":null,"Total":0}
引用次数: 0

摘要

由1,1′-二茂铁二炔(1和2)衍生的环钨双炔配合物采用刚性构象,其中两个炔处于同步取向,可能相距约3.5 Å。由于蛋白质二级结构中的分子内氢键将供体和受体3.3 Å分开,因此提出将两个肽连接到其中一个络合物中的两个炔可能是生成生成肽β -片的模型系统的一种方法。为了探究这个问题,我们制备了一系列1的肽衍生物。通过Sonogashira偶联,4 -碘苯甲酸或4 -碘苯胺的肽衍生物与1发生反应,实现了肽与双金属环体系的附着。随后这些双炔与W(CO)3(dmtc)2 (dmtc =二甲双氨基甲酸酯)反应得到所需的环钨双炔配合物,为1:1的非对映体混合物。两种非对映体采用常规色谱方法(薄层色谱、高效液相色谱和闪蒸色谱)无法分离;然而,它们的存在和相对数量可以在1H NMR光谱中检测和测量。这些1的肽衍生物的构象用NMR和DFT方法进行了检测。结果发现,在两个炔上附加肽并不会改变2 -二茂铁-钨-双炔环体系的刚性构象;环体系保持刚性,并保留了跨双金属环体系的分子内氢键。通过DMSO滴定实验和计算方法,探讨了这些配合物中的酰胺和聚氨酯NH质子是否参与分子内氢键。DMSO滴定数据表明,分子内氢键只有一个,横跨双金属环的氢键;其他酰胺和氨基甲酸乙酯NH质子可被溶剂接触。DFT计算表明,附着在双金属环体系上的肽可以采用许多具有相似能量的不同取向,其中一些构象包括交叉链氢键。数据表明,通过两个炔将肽附加到双金属环系统中产生的分子中,两个肽保持平行排列。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

摘要图片

查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
Parallel arrangement of peptides appended to a rigid, bimetallic, constrained ring system
Cyclic tungsten bis‐alkyne complexes derived from a 1,1′‐ferrocenyldialkyne (1 and 2) adopt a rigid conformation where the two alkynes are in a syn orientation and are likely positioned about 3.5 Å apart. Since intramolecular hydrogen bonding in protein secondary structures positions the donors and acceptors 3.3 Å apart, it is proposed that linking two peptides to the two alkynes in one of these complexes might be a way to generate a model system for generating peptide β‐sheets. To explore this question, a series of peptide derivatives of 1 were prepared. Attachment of peptides to the bimetallic ring system was achieved by reaction of peptide derivatives of 4‐iodobenzoic acid or 4‐iodoaniline with 1 via a Sonogashira coupling. Subsequent reaction of these dialkynes with W(CO)3(dmtc)2 (dmtc = dimethylditiocarbamate) afforded the desired cyclic tungsten bis‐alkyne complexes as a 1:1 mixture of diastereomers. The two diastereomers were not separable using typical chromatographic methods (TLC, HPLC and flash chromatography); however, their presence and relative amounts could be detected and measured in the 1H NMR spectra. The conformations of these peptide derivatives of 1 were examined using NMR and DFT methods. It was found that appending the peptides to the two alkynes did not alter the rigid conformation of the ferrocene‐tungsten bis‐alkyne ring system found in 1; the ring system remained rigid and retained the intramolecular hydrogen bond across the bimetallic ring system. Whether the amide and urethane NH protons in these complexes are involved in intramolecular hydrogen bonds was explored using a DMSO titration experiment and computational methods. Data from the DMSO titrations showed that there was only one robust intramolecular hydrogen bond, the hydrogen bond across the bimetallic ring; the other amide and urethane NH protons were accessible to the solvent. The DFT calculations showed the peptides attached to the bimetallic ring system can adopt a number of different orientations having similar energies, and that some of these conformations include cross‐strand hydrogen bonds. The data indicate that appending peptides to the bimetallic ring system via the two alkynes produces molecules where the two peptides are held in a parallel arrangement.
求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Peptide Science
Peptide Science Biochemistry, Genetics and Molecular Biology-Biophysics
CiteScore
5.20
自引率
4.20%
发文量
36
期刊介绍: The aim of Peptide Science is to publish significant original research papers and up-to-date reviews covering the entire field of peptide research. Peptide Science provides a forum for papers exploring all aspects of peptide synthesis, materials, structure and bioactivity, including the use of peptides in exploring protein functions and protein-protein interactions. By incorporating both experimental and theoretical studies across the whole spectrum of peptide science, the journal serves the interdisciplinary biochemical, biomaterials, biophysical and biomedical research communities. Peptide Science is the official journal of the American Peptide Society.
期刊最新文献
Insights Into Benzothiazolyl‐Coupled Azetidinone Moieties Toward EGFR Binding and Stability Analysis—Evidence From Molecular Docking and Dynamics Simulation Exploring the Therapeutic Potential of Algerian Propolis: GC/MS Profiling, Protective Inclusion Complex, and In Silico Evaluation Against SARS‐CoV‐2 Main Proteases Analogs of Cyclic Peptide Mortiamide‐D From Marine Fungi Have Improved Membrane Permeability and Kill Drug‐Resistant Melanoma Cells In Silico Analysis of Conformational Dynamics and Energetic Landscapes of Putative Insulinase PF11_0189 From the Plasmodium falciparum Genome With Insulin‐Derived Peptides: Approach to Rationale Design of Insulin Peptide‐Based Inhibitors Empowering Antimicrobial Peptides: Harnessing Nanotechnology and Engineering Strategies to Combat Microbial Resistance
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1