T. Curran, A. Marrone, Lauren M. Davidson, Niranjana Pokharel, J. Frempong, I. Tolbatov, M. L. Phillip, Cosmic B. Gober, Haoyu Yang, J. Stewart
{"title":"附在刚性、双金属、约束环体系上的肽的平行排列","authors":"T. Curran, A. Marrone, Lauren M. Davidson, Niranjana Pokharel, J. Frempong, I. Tolbatov, M. L. Phillip, Cosmic B. Gober, Haoyu Yang, J. Stewart","doi":"10.1002/pep2.24286","DOIUrl":null,"url":null,"abstract":"Cyclic tungsten bis‐alkyne complexes derived from a 1,1′‐ferrocenyldialkyne (1 and 2) adopt a rigid conformation where the two alkynes are in a syn orientation and are likely positioned about 3.5 Å apart. Since intramolecular hydrogen bonding in protein secondary structures positions the donors and acceptors 3.3 Å apart, it is proposed that linking two peptides to the two alkynes in one of these complexes might be a way to generate a model system for generating peptide β‐sheets. To explore this question, a series of peptide derivatives of 1 were prepared. Attachment of peptides to the bimetallic ring system was achieved by reaction of peptide derivatives of 4‐iodobenzoic acid or 4‐iodoaniline with 1 via a Sonogashira coupling. Subsequent reaction of these dialkynes with W(CO)3(dmtc)2 (dmtc = dimethylditiocarbamate) afforded the desired cyclic tungsten bis‐alkyne complexes as a 1:1 mixture of diastereomers. The two diastereomers were not separable using typical chromatographic methods (TLC, HPLC and flash chromatography); however, their presence and relative amounts could be detected and measured in the 1H NMR spectra. The conformations of these peptide derivatives of 1 were examined using NMR and DFT methods. It was found that appending the peptides to the two alkynes did not alter the rigid conformation of the ferrocene‐tungsten bis‐alkyne ring system found in 1; the ring system remained rigid and retained the intramolecular hydrogen bond across the bimetallic ring system. Whether the amide and urethane NH protons in these complexes are involved in intramolecular hydrogen bonds was explored using a DMSO titration experiment and computational methods. Data from the DMSO titrations showed that there was only one robust intramolecular hydrogen bond, the hydrogen bond across the bimetallic ring; the other amide and urethane NH protons were accessible to the solvent. The DFT calculations showed the peptides attached to the bimetallic ring system can adopt a number of different orientations having similar energies, and that some of these conformations include cross‐strand hydrogen bonds. The data indicate that appending peptides to the bimetallic ring system via the two alkynes produces molecules where the two peptides are held in a parallel arrangement.","PeriodicalId":19825,"journal":{"name":"Peptide Science","volume":"114 1","pages":""},"PeriodicalIF":1.5000,"publicationDate":"2022-06-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Parallel arrangement of peptides appended to a rigid, bimetallic, constrained ring system\",\"authors\":\"T. Curran, A. Marrone, Lauren M. Davidson, Niranjana Pokharel, J. Frempong, I. Tolbatov, M. L. Phillip, Cosmic B. Gober, Haoyu Yang, J. Stewart\",\"doi\":\"10.1002/pep2.24286\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Cyclic tungsten bis‐alkyne complexes derived from a 1,1′‐ferrocenyldialkyne (1 and 2) adopt a rigid conformation where the two alkynes are in a syn orientation and are likely positioned about 3.5 Å apart. Since intramolecular hydrogen bonding in protein secondary structures positions the donors and acceptors 3.3 Å apart, it is proposed that linking two peptides to the two alkynes in one of these complexes might be a way to generate a model system for generating peptide β‐sheets. To explore this question, a series of peptide derivatives of 1 were prepared. Attachment of peptides to the bimetallic ring system was achieved by reaction of peptide derivatives of 4‐iodobenzoic acid or 4‐iodoaniline with 1 via a Sonogashira coupling. Subsequent reaction of these dialkynes with W(CO)3(dmtc)2 (dmtc = dimethylditiocarbamate) afforded the desired cyclic tungsten bis‐alkyne complexes as a 1:1 mixture of diastereomers. The two diastereomers were not separable using typical chromatographic methods (TLC, HPLC and flash chromatography); however, their presence and relative amounts could be detected and measured in the 1H NMR spectra. The conformations of these peptide derivatives of 1 were examined using NMR and DFT methods. It was found that appending the peptides to the two alkynes did not alter the rigid conformation of the ferrocene‐tungsten bis‐alkyne ring system found in 1; the ring system remained rigid and retained the intramolecular hydrogen bond across the bimetallic ring system. Whether the amide and urethane NH protons in these complexes are involved in intramolecular hydrogen bonds was explored using a DMSO titration experiment and computational methods. Data from the DMSO titrations showed that there was only one robust intramolecular hydrogen bond, the hydrogen bond across the bimetallic ring; the other amide and urethane NH protons were accessible to the solvent. The DFT calculations showed the peptides attached to the bimetallic ring system can adopt a number of different orientations having similar energies, and that some of these conformations include cross‐strand hydrogen bonds. 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Parallel arrangement of peptides appended to a rigid, bimetallic, constrained ring system
Cyclic tungsten bis‐alkyne complexes derived from a 1,1′‐ferrocenyldialkyne (1 and 2) adopt a rigid conformation where the two alkynes are in a syn orientation and are likely positioned about 3.5 Å apart. Since intramolecular hydrogen bonding in protein secondary structures positions the donors and acceptors 3.3 Å apart, it is proposed that linking two peptides to the two alkynes in one of these complexes might be a way to generate a model system for generating peptide β‐sheets. To explore this question, a series of peptide derivatives of 1 were prepared. Attachment of peptides to the bimetallic ring system was achieved by reaction of peptide derivatives of 4‐iodobenzoic acid or 4‐iodoaniline with 1 via a Sonogashira coupling. Subsequent reaction of these dialkynes with W(CO)3(dmtc)2 (dmtc = dimethylditiocarbamate) afforded the desired cyclic tungsten bis‐alkyne complexes as a 1:1 mixture of diastereomers. The two diastereomers were not separable using typical chromatographic methods (TLC, HPLC and flash chromatography); however, their presence and relative amounts could be detected and measured in the 1H NMR spectra. The conformations of these peptide derivatives of 1 were examined using NMR and DFT methods. It was found that appending the peptides to the two alkynes did not alter the rigid conformation of the ferrocene‐tungsten bis‐alkyne ring system found in 1; the ring system remained rigid and retained the intramolecular hydrogen bond across the bimetallic ring system. Whether the amide and urethane NH protons in these complexes are involved in intramolecular hydrogen bonds was explored using a DMSO titration experiment and computational methods. Data from the DMSO titrations showed that there was only one robust intramolecular hydrogen bond, the hydrogen bond across the bimetallic ring; the other amide and urethane NH protons were accessible to the solvent. The DFT calculations showed the peptides attached to the bimetallic ring system can adopt a number of different orientations having similar energies, and that some of these conformations include cross‐strand hydrogen bonds. The data indicate that appending peptides to the bimetallic ring system via the two alkynes produces molecules where the two peptides are held in a parallel arrangement.
Peptide ScienceBiochemistry, Genetics and Molecular Biology-Biophysics
CiteScore
5.20
自引率
4.20%
发文量
36
期刊介绍:
The aim of Peptide Science is to publish significant original research papers and up-to-date reviews covering the entire field of peptide research. Peptide Science provides a forum for papers exploring all aspects of peptide synthesis, materials, structure and bioactivity, including the use of peptides in exploring protein functions and protein-protein interactions. By incorporating both experimental and theoretical studies across the whole spectrum of peptide science, the journal serves the interdisciplinary biochemical, biomaterials, biophysical and biomedical research communities.
Peptide Science is the official journal of the American Peptide Society.