内分泌干扰:邻苯二甲酸二(2-乙基己基)酯及其五种主要代谢物与孕酮受体相互作用的计算机视角

IF 2.222 Q3 Biochemistry, Genetics and Molecular Biology BMC Structural Biology Pub Date : 2016-09-30 DOI:10.1186/s12900-016-0066-4
Ishfaq A. Sheikh, Muhammad Abu-Elmagd, Rola F. Turki, Ghazi A. Damanhouri, Mohd A. Beg, Mohammed Al-Qahtani
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引用次数: 20

摘要

邻苯二甲酸二(2-乙基己基)酯(DEHP)是一种常见的内分泌干扰化合物(EDC),存在于环境中,是工业活动和聚氯乙烯产品浸出的结果。DEHP被用作医疗设备和许多商业和家庭用品的增塑剂。暴露通过吸入、摄入和皮肤接触发生。DEHP在体内代谢为一级代谢物邻苯二甲酸单(2-乙基己基)酯(MEHP),再进一步代谢为四种主要次级代谢物:邻苯二甲酸单(2-乙基-5-羟基己基)酯(5-氧-MEHP)、邻苯二甲酸单(2-乙基-5-氧-己基)酯(5-氧-MEHP)、邻苯二甲酸单(2-乙基-5-羧戊基)酯(5-cx-MEPP)和邻苯二甲酸单[2-(羧甲基)己基]酯(2-cx- mmhp)。DEHP及其代谢物与人类发育异常和生殖功能障碍有关。孕激素受体(PR)信号参与重要的生殖功能,是DEHP及其代谢物内分泌干扰活动的潜在靶点。本研究采用计算机方法对DEHP及其5种主要代谢物与PR进行结构结合分析,并检索蛋白质数据库,检索人PR (Id: 1SQN)的晶体结构。利用PubChem数据库获取DEHP及其5种代谢物的结构。对接使用滑翔(薛定谔)诱导配合对接模块进行。DEHP及其代谢物与PR的19-25个残基相互作用,大多数相互作用残基重叠(82-95?%共性)与天然结合配体norethindrone (NET)。DEHP及其5种代谢物均与PR残基Gln-725形成氢键相互作用,与NET的结合亲和力最高,其次是DEHP、5-OH-MEHP、5-oxo-MEHP、MEHP、5-cx-MEPP和2-cx-MMHP。DEHP及其五种主要代谢物与PR的高结合亲和力,以及DEHP及其代谢物与天然配体NET之间PR相互作用残基的高重叠率,表明它们具有破坏正常PR信号的潜力,从而产生不利的生殖效应。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

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Endocrine disruption: In silico perspectives of interactions of di-(2-ethylhexyl)phthalate and its five major metabolites with progesterone receptor

Di-(2-ethylhexyl)phthalate (DEHP) is a common endocrine disrupting compound (EDC) present in the environment as a result of industrial activity and leaching from polyvinyl products. DEHP is used as a plasticizer in medical devices and many commercial and household items. Exposure occurs through inhalation, ingestion, and skin contact. DEHP is metabolized to a primary metabolite mono-(2-ethylhexyl)phthalate (MEHP) in the body, which is further metabolized to four major secondary metabolites, mono(2-ethyl-5-hydroxyhexyl)phthalate (5-OH-MEHP), mono(2-ethyl-5-oxyhexyl)phthalate (5-oxo-MEHP), mono(2-ethyl-5-carboxypentyl)phthalate (5-cx-MEPP) and mono[2-(carboxymethyl)hexyl]phthalate (2-cx-MMHP). DEHP and its metabolites are associated with developmental abnormalities and reproductive dysfunction within the human population. Progesterone receptor (PR) signaling is involved in important reproductive functions and is a potential target for endocrine disrupting activities of DEHP and its metabolites. This study used in silico approaches for structural binding analyses of DEHP and its five indicated major metabolites with PR.

Protein Data bank was searched to retrieve the crystal structure of human PR (Id: 1SQN). PubChem database was used to obtain the structures of DEHP and its five metabolites. Docking was performed using Glide (Schrodinger) Induced Fit Docking module.

DEHP and its metabolites interacted with 19-25 residues of PR with the majority of the interacting residues overlapping (82-95?% commonality) with the native bound ligand norethindrone (NET). DEHP and each of its five metabolites formed a hydrogen bonding interaction with residue Gln-725 of PR. The binding affinity was highest for NET followed by DEHP, 5-OH-MEHP, 5-oxo-MEHP, MEHP, 5-cx-MEPP, and 2-cx-MMHP.

The high binding affinity of DEHP and its five major metabolites with PR as well as a high rate of overlap between PR interacting residues among DEHP and its metabolites and the native ligand, NET, suggested their disrupting potential in normal PR signaling, resulting in adverse reproductive effects.

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BMC Structural Biology
BMC Structural Biology 生物-生物物理
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期刊介绍: BMC Structural Biology is an open access, peer-reviewed journal that considers articles on investigations into the structure of biological macromolecules, including solving structures, structural and functional analyses, and computational modeling.
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