针铁矿(100)表面/水界面弱结合水结构、键价饱和度和水动力学:从头算动力学模拟

IF 0.9 4区 地球科学 Q4 GEOCHEMISTRY & GEOPHYSICS Geochemical Transactions Pub Date : 2017-03-31 DOI:10.1186/s12932-017-0040-5
Ying Chen, Eric J. Bylaska, John H. Weare
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引用次数: 19

摘要

许多重要的地球化学和生物地球化学反应发生在高富集矿物针铁矿[α-Fe(OOH)]的矿物/地层水界面。本文介绍了针铁矿α-FeOOH(100)表面的从头算分子动力学(AIMD)模拟和矿水界面水分子的结构、水键形成和动力学。使用了几个交换相关函数(PBE96, PBE96?+?)(3 × 2)针铁矿表面65个吸收水分子的3d周期超级单体(a = 30??), FeOOH平板~12?厚,溶剂化层~18??厚)。最低能量针铁矿(100)的表面终止模型被确定为有一个暴露的表面Fe3+被一个水分子和一个与邻近表面Fe3+共享的氢氧根松散地覆盖。水分子覆盖表面的Fe3+离子被发现在所有DFT水平上都是松散结合的,这表明每个表面的Fe3+只与5个邻居协调。这些长键得到了键价理论计算的支持,表明Fe3+表面的键价是饱和的,表面带有中性电荷。发现靠近表面的水层的极化很小,并且只影响最近的水。通过密度差图和局域化的Boys轨道分析,确定了三种类型的水分子:与表面Fe3+松散结合的水分子,与表面羟基结合的水分子,以及具有四面体配位的散装水分子。男孩轨道分析表明,弱吸收的水的自旋向下的孤对轨道与自旋向上的Fe3+离子的相互作用更强。发现这些弱结合的表面水分子通过解离机制与第二水层快速交换(~0.025?交换/ps)。发现靠近表面的水分子与表面的相互作用很弱,因此很容易与大量的水交换。为了解释DFT计算中较大的表面Fe-OH2距离,提出表面Fe3+原子的配位相对于体配位是欠配位的,因为它们的键价已经完全满足于只有5个邻居。
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Weakly bound water structure, bond valence saturation and water dynamics at the goethite (100) surface/aqueous interface: ab initio dynamical simulations

Many important geochemical and biogeochemical reactions occur in the mineral/formation water interface of the highly abundant mineral, goethite [α-Fe(OOH)]. Ab initio molecular dynamics (AIMD) simulations of the goethite α-FeOOH (100) surface and the structure, water bond formation and dynamics of water molecules in the mineral/aqueous interface are presented. Several exchange correlation functionals were employed (PBE96, PBE96?+?Grimme, and PBE0) in the simulations of a (3?×?2) goethite surface with 65 absorbed water molecules in a 3D-periodic supercell (a?=?30??, FeOOH slab ~12?? thick, solvation layer ~18?? thick).

The lowest energy goethite (100) surface termination model was determined to have an exposed surface Fe3+ that was loosely capped by a water molecule and a shared hydroxide with a neighboring surface Fe3+. The water molecules capping surface Fe3+ ions were found to be loosely bound at all DFT levels with and without Grimme corrections, indicative that each surface Fe3+ was coordinated with only five neighbors. These long bonds were supported by bond valence theory calculations, which showed that the bond valence of the surface Fe3+ was saturated and surface has a neutral charge. The polarization of the water layer adjacent to the surface was found to be small and affected only the nearest water. Analysis by density difference plots and localized Boys orbitals identified three types of water molecules: those loosely bound to the surface Fe3+, those hydrogen bonded to the surface hydroxyl, and bulk water with tetrahedral coordination. Boys orbital analysis showed that the spin down lone pair orbital of the weakly absorbed water interact more strongly with the spin up Fe3+ ion. These weakly bound surface water molecules were found to rapidly exchange with the second water layer (~0.025?exchanges/ps) using a dissociative mechanism.

Water molecules adjacent to the surface were found to only weakly interact with the surface and as a result were readily able to exchange with the bulk water. To account for the large surface Fe–OH2 distances in the DFT calculations it was proposed that the surface Fe3+ atoms, which already have their bond valence fully satisfied with only five neighbors, are under-coordinated with respect to the bulk coordination.

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来源期刊
Geochemical Transactions
Geochemical Transactions 地学-地球化学与地球物理
CiteScore
3.70
自引率
4.30%
发文量
2
审稿时长
>12 weeks
期刊介绍: Geochemical Transactions publishes high-quality research in all areas of chemistry as it relates to materials and processes occurring in terrestrial and extraterrestrial systems.
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