两个昆虫相关酵母种——夹竹桃和二氏桃的分类基因组定位。

IF 2.2 4区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Yeast Pub Date : 2023-12-01 Epub Date: 2023-10-26 DOI:10.1002/yea.3904
Neža Čadež, Kyria Boundy-Mills, Alfred Botha, Aleksey Kachalkin, Dénes Dlauchy, Gábor Péter
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引用次数: 0

摘要

在欧洲、北美和非洲的独立研究过程中,从昆虫粪便、腐烂的木材、树木流量和橄榄油沉积物中分离出7种酵母菌株。对两个条形码DNA区域(LSU rRNA基因的内部转录间隔区和D1/D2结构域)的系统发育分析表明,它们属于两个密切相关的未描述物种,不同于无核菌科的所有属。为了进行可靠的分类学定位,对两个新物种的四个菌株和密切相关物种的六个模式菌株的基因组进行了测序。将来自Pichiomycetes代表性的54个基因组和23个外类群的同源基因连接起来,构建一个完全支持的系统发育树。与这些假设一致,我们发现这两个新物种属于一个新属。此外,根据平均核苷酸同一性(ANI)和数字DNA:DNA杂交(DDH)值进行的遗传距离计算支持了新物种的划界。新物种的生理特征与其基因组含量基本一致。所有菌株都有两个等位基因,编码分泌型脂肪酶,根据物种的不同,有两个或三个拷贝。然而,只有在具有三个分泌型脂肪酶基因拷贝的菌株中才检测到脂解活性。然而,脂解活性可能与它们与昆虫肠道的关系有关。基于这些结果,提供了新属Rasporella gen.nov.和两个新种Rasporella-dianae sp.nov.(正模UCDFST 68-643T,MycoBank编号:850238)和Rasporella-oleae sp.nov(正模ZIM 2471T,MycoBank编号:850126)的正式描述。
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Taxogenomic placement of Rasporella oleae and Rasporella dianae gen. and spp. nov., two insect associated yeast species.

During the course of independent studies in Europe, North America, and Africa, seven yeast strains were isolated from insect frass, decaying wood, tree flux, and olive oil sediment. Phylogenetic analysis of two barcoding DNA regions (internal transcribed spacer and the D1/D2 domain of the LSU rRNA gene) revealed that they belong to two closely related undescribed species distinct from all genera in the family Debaryomycetaceae. For reliable taxonomic placement the genomes of four strains of the two novel species and six type strains of closely related species were sequenced. Orthologous genes from 54 genomes of representatives of the Pichiomycetes and 23 outgroup taxa were concatenated to construct a fully supported phylogenetic tree. Consistent with the assumptions, we found that the two new species belong to a novel genus. In addition, the delimitation of the novel species was supported by genetic distance calculations from average nucleotide identity (ANI) and digital DNA:DNA hybridization (dDDH) values. The physiological characterization of the novel species was generally consistent with their genomic content. All strains had two alleles encoding secretory lipase in either two or three copies depending on the species. However, lipolytic activity was detected only in strains with three copies of the secretory lipase gene. Nevertheless, lipolytic activity might be related to their association with the insect gut. Based on these results, formal descriptions of the new genus Rasporella gen. nov. and of two new species Rasporella dianae sp. nov. (holotype UCDFST 68-643T , MycoBank no.: 850238) and Rasporella oleae sp. nov. (holotype ZIM 2471T , MycoBank no.: 850126) are provided.

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来源期刊
Yeast
Yeast 生物-生化与分子生物学
CiteScore
5.30
自引率
3.80%
发文量
55
审稿时长
3 months
期刊介绍: Yeast publishes original articles and reviews on the most significant developments of research with unicellular fungi, including innovative methods of broad applicability. It is essential reading for those wishing to keep up to date with this rapidly moving field of yeast biology. Topics covered include: biochemistry and molecular biology; biodiversity and taxonomy; biotechnology; cell and developmental biology; ecology and evolution; genetics and genomics; metabolism and physiology; pathobiology; synthetic and systems biology; tools and resources
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