种群保护与基因组学,第3版,Allendorf F.W.,Funk W.C.,Aitken S.N.,Byrne M.,Luikart G。

IF 3.5 2区 生物学 Q1 EVOLUTIONARY BIOLOGY Evolutionary Applications Pub Date : 2022-10-31 DOI:10.1111/eva.13499
Gernot Segelbacher
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For many readers with a conservation background, this is a helpful overview without getting lost in too much detail. What else is new? The book is not only thicker (746 pages compared with 664 of the first edition) but also heavier (now 1.68 kg, compared with the 1.29 kg of the first edition), and coloured figures and photos have been added. More importantly, the book is more diverse: The author team has been expanded over time, with Chris Funk and Margaret Byrne added for the 3rd edition, Sally Aitken added for the 2nd edition authors team and the two original authors Fred Allendorf and Gordon Luikart. The authors also included additional guest authors (<i>n</i> = 42). These provided case studies with wide taxonomic coverage and in various ecosystems something that is a strength of the book. Readers can get a good impression of the underlying concepts of the field and how genomic tools can be applied in real-world scenarios.</p><p>The outline of the book remained similar in the first part including a general introduction on methods and the role of genetic tools in conservation. The second part explains the principles of population genetics concisely and has been updated with more actual examples. The former third part has now been split into two parts, namely ‘evolutionary response to anthropogenic changes’ and ‘conservation and management’. The chapters of the previous 2nd edition have been rearranged across these two new parts. However, I felt the distinction in the two parts a bit difficult to follow, as chapters on hybridisation and invasive species are not anymore in the ‘management’ chapter but still have management-related aspects. There is a new chapter on genetic monitoring (formerly included in the species identification and now expanded) and the book ends with a dedicated chapter on conservation genetics in practice (written by Helen Taylor). This last chapter is one of the highlights of the book for me. It links to applied management and how we can potentially overcome the conservation genetics gap. This chapter also makes a good ending by illustrating the rationale of the book and why the book is essential for the conservation community. Genetic diversity is receiving more attention in management internationally and nationally, and this book gives a number of illustrative case studies. However, while the number of scientific papers in the field of conservation genetics and management is still increasing, the integration of genetic diversity on the policy level is still low.</p><p>So who should read this book? 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引用次数: 0

摘要

自2007年第一版《种群保护与遗传学》出版以来,已经过去了15年。从那时起,分子工具迅速发展,使用大型基因组数据集的科学论文数量稳步增加。本书作者在图4.1中提供了一个信息丰富的更新图。随着时间的推移,遗传标记的发展,我们可以预期基因组测序在未来几年将发挥更重要的作用。因此,用“基因组学”取代“遗传学”似乎是及时的。作者现在增加了一个关于人口基因组学的全新章节,对当前的测序技术和工作流程进行了简要概述。对于许多具有保护背景的读者来说,这是一个有用的概述,而不会迷失在太多的细节中。还有什么新鲜事吗?这本书不仅更厚(746页,第一版是664页),而且更重(现在是1.68公斤,第一版是1.29公斤),而且还增加了彩色的人物和照片。更重要的是,这本书更加多样化:作者团队随着时间的推移而扩大,克里斯·芬克和玛格丽特·伯恩加入了第三版,莎莉·艾特肯加入了第二版作者团队,两位原作者弗雷德·阿伦多夫和戈登·卢克特。作者还包括额外的客座作者(n = 42)。这些案例研究提供了广泛的分类学覆盖范围,并在不同的生态系统的东西是这本书的长处。读者可以对该领域的基本概念以及基因组工具如何在现实世界中应用有一个很好的印象。该书的大纲与第一部分相似,包括对遗传工具在保护中的方法和作用的一般介绍。第二部分简明地解释了群体遗传学的原理,并补充了更多的实际例子。前三部分现在被分成两个部分,即“对人为变化的进化反应”和“保护与管理”。以前的第二版的章节已经在这两个新的部分重新安排。然而,我觉得这两部分的区别有点难以理解,因为关于杂交和入侵物种的章节不再在“管理”章节中,但仍然有管理相关的方面。有一个关于遗传监测的新章节(以前包括在物种鉴定中,现在扩展了),书的最后有一个关于保护遗传学实践的专门章节(由海伦泰勒撰写)。对我来说,最后一章是这本书的亮点之一。它与应用管理以及我们如何能够潜在地克服保护遗传学差距有关。本章还通过说明这本书的基本原理以及为什么这本书对保护社区至关重要,做了一个很好的结尾。遗传多样性在国际和国内管理中受到越来越多的关注,这本书给出了一些说明性的案例研究。然而,尽管保护遗传学和管理领域的科学论文数量仍在增加,但遗传多样性在政策层面的整合仍然很低。那么谁应该读这本书呢?最后有一节问道,“我怎样才能成为一名保护遗传学家?”——应该把这本书作为这个领域的下一代专家的起点。学生和老师一定会受益于最新的文献和案例研究和广泛的词汇表提供。如今,许多研究都应用了最新的基因组工具,学生们常常把大部分时间花在编码或生物信息学分析上。有一种风险是,一方面忘记了群体遗传学的基本原则,另一方面忘记了管理的含义。我确实认为这本书用现实世界的例子很好地补充了理论,并提供了重要的背景阅读,我将推荐给每一个开始保护基因组学项目的学生。知情的自然资源保护主义者也将受益于对当今技术的概述。虽然我为作者们承担了如此庞大的任务来更新这本书而鼓掌,但我发现了一些事情,这些事情可能会在未来得到更多的关注:数据存储、数据标准化和国际协作的复杂性变得越来越重要。从微型卫星时代我们已经知道,很难在实验室或国家之间比较结果——更多可用的数据将需要在世界范围内就协议和标准达成明确的协议。对于元条形码和eDNA测量生物多样性的方法的爆炸式应用来说尤其如此,这在书中得到的关注相对较少。说了这么多,我惊讶地发现,照片和照片的质量往往是相当低的印刷。 似乎很多人要等很长时间才能从新的出版商那里买到这本书。电子访问也非常限制和有限。我确实认为,如果这本书更容易获得,它将对世界各地的许多学生和从业者产生更大的影响和更相关。分子工具仍在迅速发展,技术甚至允许在偏远地区使用便携式测序工具。作者在总结最近的发展方面做了出色的工作,并包括了文献中的最新讨论(例如突出了宏观遗传学领域)。显然,该领域将迅速发展,并且随着越来越多的其他物种的基因组可用,存在更多的分析机会。与此同时,大量的数据增加了额外的复杂性,因此与管理人员的协作和沟通将变得更加重要。单个科学家取样、分析、解释数据甚至提出建议的时代已经一去不复返了,保护遗传学/基因组学领域现在是一个真正的合作和团队努力的领域。作者已经展示了这样一个成功的合作是怎样的。
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Conservation and the genomics of populations, 3rd edition, Allendorf F. W., Funk W. C., Aitken S. N., Byrne M., Luikart G.

It has been 15 years since the first edition of ‘Conservation and the Genetics of Populations’ was published in 2007. Since then, molecular tools have been rapidly advancing, and the number of scientific papers using large genomic datasets is steadily increasing. The authors of the book present an informative updated graph in figure 4.1. on the development of genetic markers over time, and we can expect the sequencing of genomes playing an even more important role in the coming years. Thus, the new title replacing the ‘genetics’ by ‘genomics’ seems to be timely. The authors now added a full new chapter on population genomics, giving a brief overview on current sequencing technologies and workflows. For many readers with a conservation background, this is a helpful overview without getting lost in too much detail. What else is new? The book is not only thicker (746 pages compared with 664 of the first edition) but also heavier (now 1.68 kg, compared with the 1.29 kg of the first edition), and coloured figures and photos have been added. More importantly, the book is more diverse: The author team has been expanded over time, with Chris Funk and Margaret Byrne added for the 3rd edition, Sally Aitken added for the 2nd edition authors team and the two original authors Fred Allendorf and Gordon Luikart. The authors also included additional guest authors (n = 42). These provided case studies with wide taxonomic coverage and in various ecosystems something that is a strength of the book. Readers can get a good impression of the underlying concepts of the field and how genomic tools can be applied in real-world scenarios.

The outline of the book remained similar in the first part including a general introduction on methods and the role of genetic tools in conservation. The second part explains the principles of population genetics concisely and has been updated with more actual examples. The former third part has now been split into two parts, namely ‘evolutionary response to anthropogenic changes’ and ‘conservation and management’. The chapters of the previous 2nd edition have been rearranged across these two new parts. However, I felt the distinction in the two parts a bit difficult to follow, as chapters on hybridisation and invasive species are not anymore in the ‘management’ chapter but still have management-related aspects. There is a new chapter on genetic monitoring (formerly included in the species identification and now expanded) and the book ends with a dedicated chapter on conservation genetics in practice (written by Helen Taylor). This last chapter is one of the highlights of the book for me. It links to applied management and how we can potentially overcome the conservation genetics gap. This chapter also makes a good ending by illustrating the rationale of the book and why the book is essential for the conservation community. Genetic diversity is receiving more attention in management internationally and nationally, and this book gives a number of illustrative case studies. However, while the number of scientific papers in the field of conservation genetics and management is still increasing, the integration of genetic diversity on the policy level is still low.

So who should read this book? A section in the end asks, ‘how do I become a conservation geneticist?’—and it is the future generation of experts in the field that should use this book as a starting point. Students and teachers will definitely benefit from the updated literature and case studies and the extensive glossary provided. Today, many studies apply the latest genomic tools, and often students are left in spending most of their days with coding or bioinformatics analyses. There is a risk to forget about the underlying principles of population genetics on the one side and the management implications on the other. I do think the book nicely complements the theory with real-world examples and provides important background reading, which I would recommend to each student starting a conservation genomics project. Informed conservationists will also benefit from the overview on what is possible with today's technologies.

While I applaud the authors for undertaking such massive tasks in updating the book, I found a few things, which will likely get more attention in the future: The added complexity of data storage, data standardization and international collaborations is getting more and more important. We already know from the times of microsatellites that it is difficult to compare results among labs or countries—more data that are available will need clear agreements on protocols and standards across the world. This is especially true for the exploding applications of metabarcoding and eDNA approaches for measuring biodiversity, which gets relatively little attention in the book.

Saying all this, I was surprised that the quality of pictures and photographs was often quite low in printing. It also seems that many people had to wait very long to obtain the book from the new publisher. Electronic access is also very restricted and limited. I do think the book would have an even higher impact and be more relevant for many students and practitioners across the world if it would be more accessible.

Molecular tools are still rapidly developing and technologies allow even the use of portable sequencing tools in remote areas. The authors did an excellent job in summarizing the recent developments and included the most recent discussion in the literature (such as highlighting the field of macrogenetics). Obviously, the field will move forward rapidly, and with more and more genomes of additional species available, more opportunities for analyses exist. At the same time, the vast amount of data adds an additional level of complexity, so that collaborations and communication with managers will become even more important. The times when a single scientist was sampling, analysing, interpreting data and maybe even giving recommendations all in one person are gone, and the field of conservation genetics/genomics is now a true collaborative and team effort. The authors have shown how such a successful collaboration can look like.

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来源期刊
Evolutionary Applications
Evolutionary Applications 生物-进化生物学
CiteScore
8.50
自引率
7.30%
发文量
175
审稿时长
6 months
期刊介绍: Evolutionary Applications is a fully peer reviewed open access journal. It publishes papers that utilize concepts from evolutionary biology to address biological questions of health, social and economic relevance. Papers are expected to employ evolutionary concepts or methods to make contributions to areas such as (but not limited to): medicine, agriculture, forestry, exploitation and management (fisheries and wildlife), aquaculture, conservation biology, environmental sciences (including climate change and invasion biology), microbiology, and toxicology. All taxonomic groups are covered from microbes, fungi, plants and animals. In order to better serve the community, we also now strongly encourage submissions of papers making use of modern molecular and genetic methods (population and functional genomics, transcriptomics, proteomics, epigenetics, quantitative genetics, association and linkage mapping) to address important questions in any of these disciplines and in an applied evolutionary framework. Theoretical, empirical, synthesis or perspective papers are welcome.
期刊最新文献
Tracking the North American Asian Longhorned Beetle Invasion With Genomics Prioritizing Conservation Areas for the Hyacinth Macaw (Anodorhynchus hyacinthinus) in Brazil From Low-Coverage Genomic Data Genomic Data Support the Revision of Provenance Regions Delimitation for Scots Pine Sex Pheromone Mediates Resource Partitioning Between Drosophila melanogaster and D. suzukii Estimating Demographic Parameters for Bearded Seals, Erignathus barbatus, in Alaska Using Close-Kin Mark-Recapture Methods
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